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KX077889.1__ANM47323.1__X__00003
Bact-VirKX077889.1__ANM47323.1__X__00003
Identity
- Accession:
- KX077889 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Taxonomy
TaxID: 1860195
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-54
D2
high
residues 124-238
Domain cluster:
rep: NC_022765.1__YP_008770570.1__Riggi_13__00013__D58-158
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g1iA02 | 3.30.300.170 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.73 | 45.0 | 5.54e-01 | 76.5% | 100.0% |
| 4alzA02 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.72 | 42.0 | 5.27e-01 | 82.6% | 97.1% |
| 2pt7G01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.69 | 46.0 | 5.41e-01 | 79.1% | 100.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 51.0 | 5.48e-01 | 92.2% | 98.9% |
| 2ayaA00 | 3.30.300.150 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V | 0.65 | 41.0 | 4.02e-01 | 75.7% | 57.0% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.65 | 53.0 | 5.50e-01 | 97.4% | 92.7% |
| 4tpsD00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.65 | 45.0 | 5.14e-01 | 80.9% | 97.6% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.65 | 60.0 | 4.20e-01 | 99.1% | 34.5% |
| 1yj7D02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.65 | 45.0 | 5.01e-01 | 89.6% | 94.3% |
| 1vehA01 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.64 | 42.0 | 4.89e-01 | 81.7% | 100.0% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.64 | 59.0 | 5.73e-01 | 98.3% | 100.0% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.63 | 48.0 | 5.28e-01 | 80.9% | 98.9% |
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.62 | 44.0 | 4.87e-01 | 82.6% | 93.3% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 50.0 | 5.16e-01 | 86.1% | 97.2% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 51.0 | 5.17e-01 | 96.5% | 95.6% |
| 1gpmA03 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 47.0 | 4.81e-01 | 83.5% | 97.2% |
| 2b4vA02 | 3.30.460.50 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.59 | 44.0 | 4.37e-01 | 79.1% | 100.0% |
| 3m7vA02 | 3.30.70.1250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phosphopentomutase | 0.58 | 50.0 | 4.95e-01 | 93.9% | 100.0% |
| 3fvyA03 | 3.30.70.2600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.20e-01 | 80.0% | 96.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 37.0 | 4.35e-01 | 88.7% | 98.7% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.57 | 45.0 | 4.73e-01 | 85.2% | 96.2% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 39.0 | 3.09e-01 | 70.4% | 100.0% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.57 | 41.0 | 3.80e-01 | 97.4% | 59.6% |
| 1nnnA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.55 | 46.0 | 4.53e-01 | 88.7% | 96.7% |
| 3g7kB02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 48.0 | 4.16e-01 | 97.4% | 69.6% |
| 2h9fA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 47.0 | 4.07e-01 | 98.3% | 87.8% |
| 3ngqA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.54 | 46.0 | 3.36e-01 | 95.7% | 50.1% |
| 4fbwA02 | 3.30.110.110 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Mre11, capping domain | 0.53 | 43.0 | 4.51e-01 | 98.3% | 97.1% |
| 4dmgA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.52 | 31.0 | 3.85e-01 | 97.4% | 94.4% |
| 1w2wA00 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 39.0 | 3.27e-01 | 80.0% | 58.6% |
| 3qh4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.34e-01 | 96.5% | 57.6% |
| 3mogA03 | 3.30.750.190 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 33.0 | 3.57e-01 | 73.0% | 78.7% |
| 7tjhE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.69e-01 | 91.3% | 65.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079059 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.76 | 44.0 | 5.33e-01 | 77.4% | 88.0% |
| 5014590 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.75 | 44.0 | 5.37e-01 | 79.1% | 90.7% |
| 5053911 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.73 | 46.0 | 5.46e-01 | 82.6% | 96.0% |
| 363469 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.73 | 45.0 | 5.52e-01 | 76.5% | 100.0% |
| 3590902 | 327.11.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KhpA-B_KH | 0.71 | 48.0 | 5.59e-01 | 79.1% | 100.0% |
| None | — | 0.69 | 59.0 | 3.97e-01 | 92.2% | 39.5% | |
| 4243912 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.69 | 55.0 | 5.46e-01 | 84.3% | 81.7% |
| 4082907 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.68 | 48.0 | 4.99e-01 | 83.5% | 79.0% |
| 3605866 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.68 | 57.0 | 3.87e-01 | 91.3% | 39.9% |
| 4997583 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.68 | 41.0 | 5.01e-01 | 81.7% | 98.6% |
| 3717573 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.68 | 56.0 | 3.78e-01 | 90.4% | 37.9% |
| 3786473 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.68 | 53.0 | 5.78e-01 | 83.5% | 100.0% |
| 3618616 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.67 | 55.0 | 5.52e-01 | 95.7% | 84.9% |
| 4323898 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.67 | 57.0 | 5.14e-01 | 89.6% | 71.3% |
| 4938489 | 327.4.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain | 0.66 | 49.0 | 5.41e-01 | 80.9% | 97.8% |
| 5022751 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.66 | 46.0 | 5.02e-01 | 88.7% | 88.4% |
| 283585 | 327.13.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF | 0.65 | 45.0 | 4.86e-01 | 88.7% | 84.5% |
| 4947038 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.65 | 39.0 | 4.82e-01 | 70.4% | 98.6% |
| 5897 | 327.6.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › NifU | 0.65 | 45.0 | 5.00e-01 | 87.0% | 93.2% |
| 3743726 | 327.5.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 | 0.64 | 57.0 | 5.27e-01 | 96.5% | 88.3% |
| 3839896 | 327.11.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KhpA-B_KH | 0.64 | 47.0 | 5.22e-01 | 81.7% | 98.9% |
| 4645686 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.64 | 53.0 | 4.88e-01 | 88.7% | 75.2% |
| 4444224 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.63 | 49.0 | 4.85e-01 | 90.4% | 77.5% |
| 4934961 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.62 | 42.0 | 4.44e-01 | 83.5% | 76.2% |
| 3404978 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.60 | 53.0 | 3.82e-01 | 98.3% | 79.9% |
| 3656902 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 43.0 | 4.44e-01 | 74.8% | 87.0% |
| 3596720 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 48.0 | 4.50e-01 | 86.1% | 85.7% |
| 4574142 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.60 | 41.0 | 3.30e-01 | 70.4% | 60.0% |
| 3551595 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.60 | 51.0 | 3.58e-01 | 94.8% | 54.5% |
| 3608603 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.59 | 48.0 | 4.21e-01 | 87.0% | 79.4% |
| 4040549 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.59 | 52.0 | 4.38e-01 | 96.5% | 94.7% |
| 3725488 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.59 | 49.0 | 3.63e-01 | 93.9% | 49.7% |
| 4634501 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.58 | 32.0 | 3.72e-01 | 92.2% | 76.2% |
| 3920206 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.58 | 50.0 | 3.52e-01 | 97.4% | 77.2% |
| 5041614 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.58 | 42.0 | 4.28e-01 | 78.3% | 92.2% |
| 4029776 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.57 | 48.0 | 3.43e-01 | 93.9% | 60.9% |
| 3917573 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.56 | 45.0 | 4.68e-01 | 86.1% | 96.4% |
| 4023992 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.56 | 49.0 | 3.42e-01 | 97.4% | 78.4% |
| 5072639 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 46.0 | 4.15e-01 | 93.9% | 64.2% |
| 3266452 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.56 | 47.0 | 4.44e-01 | 92.2% | 95.0% |
| 3797594 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.56 | 48.0 | 3.44e-01 | 97.4% | 53.8% |
| 4027525 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.56 | 46.0 | 4.68e-01 | 87.8% | 94.5% |
| 3795688 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.55 | 48.0 | 3.44e-01 | 97.4% | 54.2% |
| 3928377 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 48.0 | 4.10e-01 | 96.5% | 81.5% |
| 3697816 | 2008.1.1.99 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 | 0.53 | 44.0 | 3.80e-01 | 92.2% | 56.5% |
| 4363388 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.52 | 37.0 | 3.95e-01 | 78.3% | 86.9% |
| 4076554 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.51 | 45.0 | 4.00e-01 | 100.0% | 84.1% |
| 4583141 | 2008.1.1.134 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › XhoI | 0.51 | 44.0 | 3.86e-01 | 94.8% | 65.3% |
| 3438116 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.51 | 45.0 | 3.61e-01 | 99.1% | 88.7% |