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KX077889.1__ANM47363.1__X__00043
Bact-VirKX077889.1__ANM47363.1__X__00043
Identity
- Accession:
- KX077889 ↗
- Kingdom:
- phage
Quality
94.7
mean pLDDT
Taxonomy
TaxID: 1860195
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 145-212
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03883.21 best | H2O2_YaaD | 49.3 | 6.40e-13 | 83.8% | 22.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p7aA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.68 | 42.0 | 3.76e-01 | 100.0% | 44.3% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 55.0 | 5.22e-01 | 100.0% | 97.6% |
| 6sy1A02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.61 | 48.0 | 3.01e-01 | 85.3% | 69.9% |
| 3eyyA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.60 | 39.0 | 4.26e-01 | 97.1% | 88.2% |
| 3ar4A04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.60 | 51.0 | 3.54e-01 | 97.1% | 94.7% |
| 4lmyA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.60 | 39.0 | 4.22e-01 | 95.6% | 83.3% |
| 1qtqA02 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.57 | 49.0 | 4.52e-01 | 98.5% | 86.7% |
| 5gxdA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 46.0 | 2.80e-01 | 91.2% | 48.8% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 33.0 | 3.35e-01 | 89.7% | 61.2% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.53 | 44.0 | 3.49e-01 | 100.0% | 95.1% |
| 4c97A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.51e-01 | 91.2% | 93.3% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.53 | 42.0 | 3.13e-01 | 89.7% | 66.7% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.52 | 40.0 | 2.81e-01 | 83.8% | 77.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4156354 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.98 | 91.0 | 5.91e-01 | 97.1% | 26.9% |
| 4531627 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.98 | 91.0 | 5.85e-01 | 97.1% | 26.0% |
| 4475823 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.97 | 90.0 | 5.83e-01 | 97.1% | 26.4% |
| 4261392 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.97 | 88.0 | 5.74e-01 | 95.6% | 27.3% |
| None | — | 0.96 | 92.0 | 5.91e-01 | 100.0% | 26.3% | |
| 4140146 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.96 | 91.0 | 5.95e-01 | 100.0% | 28.0% |
| 4214962 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.96 | 91.0 | 5.91e-01 | 100.0% | 27.4% |
| 4597976 | 7599.1.1.0 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA | 0.96 | 91.0 | 5.86e-01 | 100.0% | 26.4% |
| 4063654 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.95 | 89.0 | 5.72e-01 | 98.5% | 25.3% |
| 4187820 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.95 | 89.0 | 5.75e-01 | 98.5% | 26.3% |
| 4349070 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.95 | 89.0 | 5.78e-01 | 98.5% | 26.8% |
| 4350989 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.94 | 88.0 | 5.74e-01 | 100.0% | 26.8% |
| 4146977 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.93 | 87.0 | 5.66e-01 | 100.0% | 26.7% |
| 4070790 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.92 | 87.0 | 5.66e-01 | 100.0% | 27.3% |
| 4164413 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.92 | 85.0 | 5.52e-01 | 97.1% | 26.9% |
| 3388329 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.83 | 74.0 | 4.92e-01 | 100.0% | 26.9% |
| 3706436 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.60 | 37.0 | 2.60e-01 | 92.6% | 20.0% |
| 3920350 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 51.0 | 4.37e-01 | 100.0% | 90.0% |
| 4933431 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.57 | 42.0 | 3.87e-01 | 79.4% | 95.6% |
| 4407089 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.57 | 48.0 | 4.76e-01 | 100.0% | 94.3% |
| 5073048 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.56 | 41.0 | 3.84e-01 | 80.9% | 95.6% |
| 3642829 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.56 | 37.0 | 2.58e-01 | 88.2% | 20.5% |
| 4172499 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.56 | 43.0 | 3.30e-01 | 83.8% | 67.5% |
| 4570617 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.56 | 48.0 | 4.77e-01 | 100.0% | 95.7% |
| 4529995 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.56 | 41.0 | 3.29e-01 | 83.8% | 96.2% |
| 3066663 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 42.0 | 2.85e-01 | 97.1% | 19.4% |
| 4947520 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.53 | 44.0 | 3.51e-01 | 100.0% | 93.8% |
| 3484587 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.53 | 39.0 | 2.87e-01 | 77.9% | 47.4% |
| 4356092 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.53 | 39.0 | 3.62e-01 | 82.4% | 83.3% |
| 5065686 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 46.0 | 3.40e-01 | 98.5% | 51.7% |
| 4102221 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.52 | 42.0 | 3.20e-01 | 89.7% | 57.0% |
| 4989839 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.52 | 41.0 | 3.54e-01 | 92.6% | 86.7% |
| 3393348 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.51 | 43.0 | 3.25e-01 | 94.1% | 75.9% |
| 5078992 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 44.0 | 3.62e-01 | 98.5% | 74.6% |
| 5028892 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 44.0 | 3.22e-01 | 98.5% | 44.6% |
| 4663703 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 43.0 | 3.15e-01 | 98.5% | 46.7% |
| 5043449 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 43.0 | 3.15e-01 | 97.1% | 44.5% |
| 3484882 | 3223.1.1.0 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 | 0.50 | 39.0 | 2.55e-01 | 85.3% | 69.9% |
D2
medium
residues 48-118
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03883.21 best | H2O2_YaaD | 60.1 | 3.30e-16 | 100.0% | 30.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jphA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.50 | 39.0 | 2.60e-01 | 88.7% | 46.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140146 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.97 | 92.0 | 6.06e-01 | 100.0% | 29.2% |
| 4187820 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.95 | 91.0 | 5.92e-01 | 100.0% | 28.2% |
| 4349070 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.94 | 89.0 | 5.83e-01 | 100.0% | 28.8% |
| 4214962 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.93 | 85.0 | 5.64e-01 | 100.0% | 27.8% |
| 4070790 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.93 | 87.0 | 5.75e-01 | 100.0% | 28.9% |
| 4156354 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.92 | 86.0 | 5.74e-01 | 100.0% | 29.4% |
| 4531627 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.92 | 86.0 | 5.66e-01 | 100.0% | 28.3% |
| 4164413 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.91 | 85.0 | 5.68e-01 | 100.0% | 29.4% |
| 4597976 | 7599.1.1.0 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA | 0.91 | 85.0 | 5.60e-01 | 100.0% | 27.9% |
| None | — | 0.91 | 85.0 | 5.58e-01 | 100.0% | 27.8% | |
| 4475823 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.91 | 85.0 | 5.60e-01 | 100.0% | 28.8% |
| 4146977 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.90 | 85.0 | 5.57e-01 | 100.0% | 28.2% |
| 4063654 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.90 | 84.0 | 5.50e-01 | 100.0% | 27.2% |
| 4350989 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.90 | 84.0 | 5.52e-01 | 100.0% | 28.3% |
| 4561698 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.85 | 78.0 | 5.19e-01 | 100.0% | 27.8% |
| 3961330 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.84 | 76.0 | 5.47e-01 | 100.0% | 36.8% |