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KX119202.1__ANT43115.1__X__00013

Bact-Vir

KX119202.1__ANT43115.1__X__00013

Identity

Accession:
KX119202 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schmidvirus› Helicobacter_phage_Pt1293U

TaxID: 1852669

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-166
PDB
Domain cluster: rep: OQ471969.1__WEU68097.1__vBAbaMABMM1_77__00077__D191-312
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12033.14 best DUF3519 29.1 1.50e-06 35.2% 36.5%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.74 35.0 4.72e-01 78.7% 87.3%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 35.0 4.38e-01 78.7% 78.9%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 32.0 3.78e-01 77.9% 72.8%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 31.0 2.98e-01 77.9% 42.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 30.0 3.82e-01 77.0% 80.3%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 42.0 4.15e-01 86.9% 71.1%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 32.0 3.83e-01 87.7% 82.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.30e-01 93.4% 83.6%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.56 30.0 3.88e-01 77.0% 90.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 32.0 3.78e-01 92.6% 82.1%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 4.24e-01 95.1% 80.8%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 34.0 3.70e-01 96.7% 77.3%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 4.01e-01 78.7% 72.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 23.0 3.12e-01 91.8% 78.0%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 4.07e-01 78.7% 84.8%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.74e-01 78.7% 68.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 26.0 3.20e-01 73.0% 80.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 32.0 3.11e-01 86.9% 56.1%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 28.0 3.52e-01 90.2% 91.3%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.90e-01 79.5% 83.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.51 39.0 3.84e-01 95.9% 74.3%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 27.0 3.44e-01 91.0% 90.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 29.0 3.28e-01 73.0% 74.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966488 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.74 44.0 5.43e-01 73.0% 96.0%
3964928 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.70 46.0 5.40e-01 77.9% 96.5%
2985816 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.68 36.0 3.45e-01 100.0% 44.8%
4937283 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.65 45.0 5.09e-01 76.2% 92.6%
5036065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 36.0 4.50e-01 76.2% 89.3%
4929919 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 41.0 4.56e-01 91.8% 82.1%
3941306 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.61 38.0 2.71e-01 77.9% 21.8%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.61 36.0 3.91e-01 90.2% 69.5%
3690349 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 32.0 2.11e-01 78.7% 12.2%
4104010 243.1.1.23 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.59 41.0 4.56e-01 93.4% 91.6%
2605238 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 41.0 4.40e-01 95.1% 82.2%
1760289 809.1.1.3 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.56 32.0 3.78e-01 92.6% 82.1%
3911301 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 29.0 3.40e-01 91.8% 70.6%
358014 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.55 42.0 4.24e-01 95.1% 80.8%
6395 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 39.0 3.93e-01 78.7% 74.8%
5015593 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.53 30.0 3.05e-01 77.0% 56.7%
3870987 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.52 32.0 3.60e-01 86.9% 78.9%
1949089 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 39.0 3.88e-01 78.7% 77.6%
3390564 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 31.0 3.31e-01 96.7% 67.6%
D2 high residues 278-424
PDB
Domain cluster: rep: KX119203.1__ANT43150.1__X__00012__D9-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18763.8 best ddrB-ParB 108.4 3.50e-31 76.2% 98.4%
D3 high residues 704-866
PDB
Domain cluster: rep: MH809533.1__AYJ74340.1__phiE058_004__00004__D579-730
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18812.7 best PBECR3 63.4 2.50e-17 72.4% 95.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.77e-01 79.8% 74.2%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.56e-01 79.1% 66.7%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.53 33.0 3.46e-01 73.6% 67.3%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 41.0 4.36e-01 82.2% 92.3%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 34.0 3.76e-01 80.4% 80.5%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.90e-01 79.8% 88.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839094 234.3.1.6 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 0.93 88.0 8.48e-01 98.2% 93.9%
3989328 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 35.0 4.55e-01 79.8% 91.5%
3540949 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 31.0 2.56e-01 72.4% 27.2%
5028231 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 38.0 4.45e-01 74.2% 90.3%
4937283 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.59 35.0 4.39e-01 85.9% 100.0%
3944846 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.59 36.0 4.20e-01 72.4% 86.1%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 28.0 3.17e-01 80.4% 58.5%
3588277 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.58 37.0 4.26e-01 71.2% 89.6%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 26.0 3.43e-01 71.2% 76.7%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.57 29.0 3.88e-01 79.8% 92.9%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 28.0 3.80e-01 87.1% 91.8%
5011833 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 34.0 4.12e-01 80.4% 94.3%
3953302 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.55 26.0 3.18e-01 85.9% 67.3%
4960403 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 24.0 3.14e-01 73.0% 74.4%
3484575 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 29.0 3.43e-01 73.0% 75.0%
4019954 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 37.0 2.80e-01 71.8% 47.1%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 26.0 3.10e-01 71.8% 69.9%
3903931 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 34.0 2.75e-01 87.1% 34.8%
D4 medium residues 447-540
PDB
Domain cluster: rep: KX119203.1__ANT43150.1__X__00012__D135-217
D5 medium residues 541-701
PDB
Domain cluster: rep: KX119197.1__ANT42939.1__X__00015__D1402-1584