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KX130668.1__ANM45846.1__NBD2_04__00004

Bact-Vir

KX130668.1__ANM45846.1__NBD2_04__00004

Identity

Accession:
KX130668 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Vilniusvirus› Escherichia_phage_vB_EcoS_NBD2

TaxID: 1852563

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-78
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 58.0 5.12e-01 100.0% 76.0%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.64 54.0 4.34e-01 95.8% 85.9%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.25e-01 94.4% 27.1%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.62 50.0 3.74e-01 87.5% 95.5%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.13e-01 87.5% 80.2%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 54.0 4.76e-01 100.0% 71.6%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.07e-01 87.5% 99.1%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 40.0 3.34e-01 73.6% 92.4%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.58 49.0 4.69e-01 94.4% 85.5%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 3.88e-01 91.7% 95.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.62e-01 95.8% 85.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.35e-01 86.1% 87.7%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.56 45.0 3.49e-01 87.5% 100.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 47.0 3.67e-01 97.2% 66.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.93e-01 90.3% 100.0%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.56 48.0 3.83e-01 98.6% 90.7%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.28e-01 98.6% 98.1%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.24e-01 100.0% 86.4%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.64e-01 86.1% 87.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.16e-01 86.1% 78.9%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.39e-01 86.1% 75.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.67e-01 95.8% 100.0%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 3.01e-01 94.4% 35.0%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 2.88e-01 91.7% 49.3%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.54 36.0 3.87e-01 70.8% 91.9%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.53 42.0 3.34e-01 88.9% 53.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.86e-01 100.0% 83.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.27e-01 84.7% 82.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.88e-01 83.3% 88.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.38e-01 84.7% 96.9%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 43.0 3.17e-01 91.7% 62.4%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.27e-01 87.5% 83.2%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.32e-01 88.9% 93.5%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 42.0 2.96e-01 95.8% 86.6%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.45e-01 97.2% 72.9%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.65e-01 93.1% 73.0%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.98e-01 91.7% 93.8%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.50 40.0 3.65e-01 91.7% 100.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.68e-01 90.3% 72.6%
3200646 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.68 54.0 4.80e-01 87.5% 80.0%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 58.0 4.75e-01 98.6% 71.5%
3937784 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 56.0 4.66e-01 98.6% 72.3%
3636285 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.64 50.0 5.22e-01 83.3% 98.5%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.64 55.0 5.27e-01 98.6% 97.6%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 56.0 4.78e-01 100.0% 79.2%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.63 51.0 5.21e-01 93.1% 100.0%
3604640 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.62 47.0 3.21e-01 83.3% 22.7%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.93e-01 94.4% 83.5%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.62 51.0 4.89e-01 93.1% 83.5%
3230646 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.61 49.0 4.27e-01 93.1% 61.7%
3242544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 3.90e-01 84.7% 66.9%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.99e-01 86.1% 76.8%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.86e-01 98.6% 85.9%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.13e-01 100.0% 98.7%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 49.0 4.47e-01 94.4% 67.0%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.59 50.0 3.83e-01 94.4% 63.9%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.61e-01 94.4% 90.6%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 46.0 4.76e-01 94.4% 96.9%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 51.0 4.01e-01 100.0% 47.1%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.58 49.0 3.71e-01 91.7% 87.3%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.49e-01 94.4% 76.7%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 50.0 3.92e-01 100.0% 58.7%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.57 47.0 4.60e-01 98.6% 86.3%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 45.0 4.10e-01 90.3% 64.0%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.39e-01 100.0% 74.7%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.56 47.0 4.02e-01 97.2% 91.3%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.11e-01 77.8% 88.6%
3263467 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 44.0 4.27e-01 86.1% 81.2%
4670395 212.1.1.14 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.56 45.0 3.43e-01 90.3% 61.1%
4302400 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.56 45.0 2.66e-01 87.5% 14.3%
3807026 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 45.0 3.30e-01 93.1% 42.3%
4492826 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 40.0 3.44e-01 77.8% 48.7%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.58e-01 83.3% 61.2%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.54 41.0 4.23e-01 87.5% 85.7%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 42.0 4.30e-01 88.9% 95.7%
3786518 4.8.1.18 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Myosin_N 0.54 44.0 4.57e-01 91.7% 100.0%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.54 43.0 4.35e-01 90.3% 91.4%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.53 46.0 3.94e-01 100.0% 80.5%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.53 44.0 3.95e-01 97.2% 99.0%
4622062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.21e-01 100.0% 46.4%
3355880 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 43.0 2.72e-01 90.3% 90.0%
3193823 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.50 40.0 2.78e-01 88.9% 80.4%