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KX130668.1__ANM45928.1__NBD2_86__00086

Bact-Vir

KX130668.1__ANM45928.1__NBD2_86__00086

Identity

Accession:
KX130668 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Vilniusvirus› Escherichia_phage_vB_EcoS_NBD2

TaxID: 1852563

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-76
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.95e-01 94.8% 100.0%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.64 51.0 3.91e-01 93.1% 94.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.64e-01 81.0% 59.9%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.28e-01 77.6% 95.5%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 47.0 3.75e-01 87.9% 92.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.62e-01 77.6% 94.0%
3s40A02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 45.0 3.53e-01 82.8% 83.6%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 43.0 3.37e-01 77.6% 85.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.11e-01 79.3% 69.6%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.59 46.0 3.30e-01 87.9% 70.7%
2qv7A02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 44.0 3.37e-01 84.5% 83.9%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.36e-01 82.8% 93.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 41.0 3.81e-01 77.6% 90.0%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 40.0 4.18e-01 100.0% 84.3%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 44.0 3.73e-01 84.5% 93.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 41.0 3.91e-01 77.6% 71.0%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 4.12e-01 89.7% 96.1%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 39.0 4.10e-01 100.0% 84.3%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.73e-01 81.0% 91.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.32e-01 77.6% 97.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 38.0 3.97e-01 100.0% 84.3%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.75e-01 81.0% 83.6%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.79e-01 94.8% 97.3%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 41.0 2.99e-01 84.5% 80.1%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 39.0 3.80e-01 84.5% 100.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 38.0 2.52e-01 81.0% 20.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.71e-01 82.8% 89.6%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.51 39.0 4.07e-01 98.3% 92.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 38.0 3.28e-01 82.8% 88.8%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.02e-01 89.7% 83.3%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.73e-01 100.0% 79.1%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.78e-01 100.0% 77.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.78e-01 79.3% 92.0%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.75e-01 84.5% 87.3%
3247601 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.71 50.0 3.09e-01 74.1% 19.7%
3466927 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.69 50.0 4.40e-01 79.3% 75.6%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 50.0 3.88e-01 77.6% 40.8%
3741303 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 46.0 4.10e-01 74.1% 94.1%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.38e-01 81.0% 83.7%
4302456 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 48.0 4.24e-01 84.5% 96.7%
5058270 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 45.0 4.54e-01 77.6% 78.3%
3947085 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 46.0 4.40e-01 81.0% 70.0%
3973043 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.41e-01 79.3% 73.8%
3634583 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 44.0 3.35e-01 75.9% 97.9%
4222724 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.62 46.0 2.86e-01 81.0% 40.8%
4066100 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.61 42.0 4.24e-01 100.0% 71.7%
3941962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 45.0 3.93e-01 81.0% 56.7%
3956333 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 47.0 3.73e-01 87.9% 86.2%
4955296 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 44.0 4.27e-01 79.3% 73.8%
5017848 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 45.0 4.31e-01 82.8% 71.4%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 43.0 4.11e-01 81.0% 68.6%
3388785 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.58 38.0 2.78e-01 100.0% 23.0%
3396594 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.12e-01 79.3% 93.3%
4966737 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.57 38.0 3.80e-01 100.0% 65.0%
3679125 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 38.0 2.78e-01 100.0% 23.9%
4944081 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.55 45.0 3.67e-01 94.8% 89.2%
3600232 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 44.0 3.16e-01 94.8% 51.5%
3284762 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.54 38.0 2.93e-01 75.9% 59.3%
5025204 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 39.0 3.54e-01 82.8% 78.9%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 3.05e-01 74.1% 75.7%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.53 43.0 3.35e-01 93.1% 56.3%
3627337 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 38.0 2.74e-01 77.6% 74.3%
3569596 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.53 36.0 2.82e-01 70.7% 73.6%
5072965 2002.1.1.57 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.52 47.0 2.84e-01 100.0% 74.9%
3641913 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.51 39.0 3.65e-01 100.0% 65.3%
1790370 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.50 41.0 2.63e-01 96.6% 86.9%