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KX130861.1__ANN86529.1__X__00001

Bact-Vir

KX130861.1__ANN86529.1__X__00001

Identity

Accession:
KX130861 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Shigella_phage_SHFML-11

TaxID: 1863008

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: rep: BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00189__D3-63
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.68 56.0 4.92e-01 96.8% 61.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.18e-01 96.8% 87.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 45.0 4.50e-01 95.2% 74.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.62 52.0 4.39e-01 100.0% 65.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.59e-01 100.0% 80.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.43e-01 93.7% 85.9%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.95e-01 98.4% 93.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.61e-01 98.4% 78.7%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 49.0 3.73e-01 95.2% 66.5%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.76e-01 95.2% 69.1%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.82e-01 96.8% 80.4%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 4.12e-01 95.2% 94.0%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 4.03e-01 92.1% 95.1%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.78e-01 92.1% 78.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.57e-01 98.4% 89.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.57 45.0 4.72e-01 93.7% 100.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 46.0 3.69e-01 95.2% 80.1%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.89e-01 93.7% 86.5%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 48.0 4.23e-01 96.8% 87.2%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.56 45.0 3.51e-01 93.7% 59.5%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.03e-01 98.4% 92.0%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.82e-01 95.2% 92.2%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.55e-01 81.0% 96.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.69e-01 96.8% 78.5%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 37.0 3.69e-01 74.6% 100.0%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 41.0 3.33e-01 84.1% 78.4%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.42e-01 81.0% 53.8%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 3.40e-01 71.4% 89.9%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 43.0 3.47e-01 96.8% 87.3%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.53 44.0 3.70e-01 95.2% 74.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.07e-01 98.4% 81.9%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 3.98e-01 96.8% 97.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.52 41.0 3.67e-01 87.3% 82.4%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.24e-01 100.0% 94.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.52e-01 96.8% 55.6%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.50 38.0 3.59e-01 84.1% 93.6%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.50 41.0 3.42e-01 100.0% 66.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 55.0 5.83e-01 98.4% 89.1%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 55.0 5.61e-01 98.4% 83.3%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 54.0 5.10e-01 98.4% 66.7%
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 50.0 5.16e-01 98.4% 76.7%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.07e-01 96.8% 71.6%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.18e-01 98.4% 71.1%
5064571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.80e-01 93.7% 62.2%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.79e-01 93.7% 62.2%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 55.0 4.71e-01 96.8% 58.0%
3467905 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.59e-01 73.0% 92.7%
3869786 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 51.0 4.08e-01 93.7% 71.7%
3933919 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.63 52.0 4.16e-01 95.2% 74.8%
3207518 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.63 53.0 4.17e-01 96.8% 80.0%
3765367 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 3.98e-01 93.7% 66.7%
3175712 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 3.88e-01 96.8% 65.5%
3273237 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.61 50.0 4.09e-01 93.7% 71.2%
3230852 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.21e-01 95.2% 98.3%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.61 48.0 4.48e-01 96.8% 70.0%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.86e-01 92.1% 96.9%
3268983 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 4.23e-01 98.4% 83.5%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.87e-01 100.0% 98.7%
4029736 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 48.0 3.56e-01 95.2% 60.5%
4405689 220.1.1.228 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C 0.59 49.0 3.79e-01 95.2% 87.3%
3789025 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 48.0 3.81e-01 93.7% 65.2%
3259098 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 48.0 3.95e-01 93.7% 72.5%
3998194 220.1.1.68 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.57 48.0 3.87e-01 98.4% 76.1%
1933320 2008.1.1.76 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SwaI-like 0.57 41.0 2.86e-01 79.4% 61.9%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 46.0 3.94e-01 95.2% 80.9%
3529648 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 47.0 3.71e-01 96.8% 77.1%
3689299 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.04e-01 96.8% 93.6%
4023296 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 44.0 4.28e-01 87.3% 81.4%
3217950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.92e-01 95.2% 91.4%
3218545 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 47.0 4.32e-01 98.4% 89.4%
3516025 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 41.0 3.63e-01 84.1% 85.7%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 44.0 3.59e-01 95.2% 64.3%
3701236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.46e-01 90.5% 78.6%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.74e-01 96.8% 51.3%
4256469 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.54 38.0 3.69e-01 100.0% 64.0%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.53 45.0 3.99e-01 98.4% 64.2%
3933166 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 45.0 3.47e-01 95.2% 75.2%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.53 44.0 4.16e-01 98.4% 76.2%
4957141 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 42.0 4.06e-01 90.5% 89.3%
4428238 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.52 40.0 3.29e-01 85.7% 92.8%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.52 43.0 3.86e-01 100.0% 63.0%
3851160 5.1.5.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz 0.52 42.0 2.43e-01 90.5% 14.9%
3389309 4.1.1.473 ↗ beta barrels › SH3 › SH3 › SH3 › PF30085, PF30086 0.52 42.0 2.93e-01 100.0% 24.5%
3897795 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 43.0 3.54e-01 95.2% 93.9%
4055020 222.1.1.25 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ChapFlgA_N 0.51 40.0 3.79e-01 87.3% 88.0%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.50 38.0 3.44e-01 100.0% 56.8%
3983415 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.50 39.0 3.79e-01 87.3% 91.9%
3839745 319.3.1.1 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.50 35.0 3.09e-01 81.0% 47.0%
D2 high residues 73-151
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 49.0 4.27e-01 83.5% 84.3%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 4.13e-01 75.9% 100.0%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 39.0 3.63e-01 73.4% 91.6%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.55 46.0 4.37e-01 100.0% 79.8%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 38.0 3.37e-01 74.7% 49.2%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 44.0 3.78e-01 92.4% 63.8%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 42.0 2.94e-01 98.7% 59.2%
3gv0A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 40.0 3.43e-01 91.1% 83.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3063543 109.23.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.71 54.0 4.61e-01 82.3% 80.2%
3968144 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 31.0 3.45e-01 74.7% 56.9%
3194789 3682.1.1.0 ↗ alpha duplicates or obligate multimers › IcmQ dimerization domain › IcmQ dimerization domain › IcmQ dimerization domain 0.60 36.0 3.08e-01 84.8% 38.4%
3969065 4168.1.1.1 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.56 37.0 4.13e-01 94.9% 98.2%
3869346 109.4.1.339 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC-Trs85 0.55 42.0 2.77e-01 81.0% 30.0%
3495244 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.66e-01 87.3% 46.3%
3614158 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 2.70e-01 98.7% 42.4%