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KX156762.1__ANM47016.1__X__00043

Bact-Vir

KX156762.1__ANM47016.1__X__00043

Identity

Accession:
KX156762 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_vB_SauS_IMEP5

TaxID: 1852565

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-121
PDB
Domain cluster: rep: NC_070786.1__YP_010652336.1__PP460_gp222__00022__D22-123
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10651.16 best BppU_N 76.9 1.80e-21 100.0% 78.5%
D2 high residues 269-362
PDB
Domain cluster: rep: OQ632216.1__WGL32639.1__Arash_gp188__00188__D185-268
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.70 41.0 4.23e-01 85.1% 60.0%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.66 58.0 4.61e-01 95.7% 72.0%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.65 43.0 4.62e-01 75.5% 79.0%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 48.0 4.37e-01 84.0% 96.8%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.96e-01 88.3% 72.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 36.0 3.73e-01 77.7% 65.9%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 50.0 4.26e-01 100.0% 85.8%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 47.0 4.58e-01 94.7% 85.6%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 42.0 3.65e-01 100.0% 55.8%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.38e-01 90.4% 82.1%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 37.0 3.35e-01 84.0% 51.1%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 4.47e-01 93.6% 97.0%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.53 48.0 3.80e-01 100.0% 56.5%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 37.0 3.83e-01 73.4% 96.6%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 44.0 3.23e-01 93.6% 40.0%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.77e-01 88.3% 75.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.76e-01 89.4% 89.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4342741 243.19.1.3 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › XkdV_N 0.92 72.0 7.57e-01 97.9% 89.4%
3967853 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.82 67.0 6.20e-01 100.0% 70.4%
5054384 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.73 43.0 4.89e-01 87.2% 78.6%
5003245 243.8.1.0 ↗ a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.67 42.0 4.69e-01 77.7% 84.3%
1678533 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.65 43.0 4.93e-01 87.2% 91.4%
4946504 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 43.0 4.87e-01 86.2% 92.9%
3962216 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 50.0 4.42e-01 89.4% 63.6%
4318843 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 51.0 4.43e-01 95.7% 61.4%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 41.0 4.20e-01 88.3% 75.6%
848 9.1.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.58 47.0 3.86e-01 88.3% 65.2%
4643894 9.1.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.58 47.0 3.97e-01 88.3% 72.5%
3633627 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 45.0 3.87e-01 81.9% 97.2%
1721532 3733.1.1.1 ↗ a+b complex topology › Orbivirus outer capsid protein VP5 › Orbivirus outer capsid protein VP5 › Orbivirus outer capsid protein VP5 › Orbi_VP5 0.56 48.0 3.01e-01 94.7% 66.7%
3181617 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 48.0 3.23e-01 100.0% 36.5%
3616618 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.29e-01 100.0% 56.8%
1724304 9.1.1.30 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like 0.55 48.0 4.74e-01 100.0% 90.3%
4977517 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 34.0 3.73e-01 97.9% 81.3%
1005076 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 43.0 2.82e-01 88.3% 36.9%
3871207 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 43.0 2.83e-01 89.4% 39.4%
3217918 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 46.0 3.18e-01 98.9% 46.5%
3827973 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 46.0 3.24e-01 100.0% 62.2%
4017734 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.52 39.0 3.67e-01 79.8% 67.0%
3685792 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 46.0 3.02e-01 97.9% 34.3%
3802207 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 46.0 3.19e-01 100.0% 63.8%
3744143 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.50 41.0 3.53e-01 100.0% 55.3%
D3 high residues 371-487
PDB
Domain cluster: rep: DQ831957.1__ABI15703.1__cn26__00026__D166-281
D4 medium residues 137-236
PDB
Domain cluster: representative