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KX190835.1__ANT40137.1__BMBtpLA4_43__00043

Bact-Vir

KX190835.1__ANT40137.1__BMBtpLA4_43__00043

Identity

Accession:
KX190835 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BtS_BMBtp15

TaxID: 1868827

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-80
PDB
Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 66.9 1.90e-18 84.9% 96.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 35.0 3.62e-01 74.2% 67.2%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 27.0 3.02e-01 72.7% 55.8%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 30.0 3.28e-01 84.8% 70.4%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.59e-01 95.5% 92.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 35.0 3.96e-01 75.8% 97.9%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.51 41.0 3.00e-01 95.5% 89.6%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.12e-01 74.2% 84.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 71.0 7.00e-01 86.4% 85.5%
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.78 61.0 6.38e-01 93.9% 91.7%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.60 35.0 3.68e-01 74.2% 63.3%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.15e-01 72.7% 31.3%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.57 36.0 3.17e-01 87.9% 41.0%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.57 41.0 3.11e-01 77.3% 51.0%
3750265 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 34.0 3.60e-01 74.2% 66.7%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 36.0 2.93e-01 77.3% 34.4%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.56 35.0 3.56e-01 74.2% 64.6%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 34.0 3.52e-01 74.2% 68.3%
3681450 2492.1.1.6 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin 0.54 32.0 2.42e-01 100.0% 21.5%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 34.0 3.12e-01 77.3% 47.8%
3199081 620.1.1.4 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 0.51 37.0 2.80e-01 77.3% 45.5%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 32.0 2.75e-01 77.3% 37.3%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.51 36.0 3.24e-01 75.8% 52.6%
D2 high residues 226-289
PDB
Domain cluster: rep: MT104122.1__QIG62564.1__X__00050__D171-224
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 46.0 6.70e-12 78.1% 78.6%
D3 medium residues 90-145
PDB
Domain cluster: rep: MT104122.1__QIG62564.1__X__00050__D171-224
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 35.9 9.80e-09 87.5% 80.4%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 53.0 3.80e-01 100.0% 86.9%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 48.0 3.85e-01 87.5% 57.6%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 42.0 3.32e-01 75.0% 90.6%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.01e-01 89.3% 65.6%
4hr6B02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.58 45.0 4.01e-01 89.3% 83.7%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.57 46.0 4.15e-01 94.6% 84.3%
2zr1A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.56 44.0 3.94e-01 89.3% 84.3%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 45.0 4.07e-01 96.4% 85.5%
1hwmA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 46.0 4.06e-01 96.4% 86.0%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 40.0 3.98e-01 94.6% 75.4%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 39.0 3.90e-01 94.6% 73.7%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 45.0 4.06e-01 96.4% 85.2%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 39.0 3.04e-01 78.6% 86.0%
4pk9A00 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.54 45.0 2.81e-01 98.2% 39.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.14e-01 96.4% 72.2%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 40.0 3.56e-01 85.7% 87.8%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.59e-01 85.7% 87.3%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 32.0 3.61e-01 87.5% 92.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.99e-01 100.0% 92.0%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.24e-01 91.1% 70.5%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.71e-01 80.4% 89.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 3.72e-01 87.5% 78.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 53.0 5.25e-01 100.0% 78.3%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.67 42.0 4.14e-01 87.5% 60.0%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.58 48.0 3.30e-01 98.2% 33.2%
5076062 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 38.0 3.90e-01 89.3% 70.9%
3593102 1016.1.1.0 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 0.58 48.0 3.80e-01 100.0% 70.0%
3698817 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.57 48.0 3.97e-01 100.0% 83.6%
137877 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.57 47.0 3.11e-01 96.4% 29.1%
4991263 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 47.0 3.36e-01 98.2% 99.5%
3266139 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.53 39.0 2.98e-01 78.6% 82.9%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.52 43.0 3.65e-01 92.9% 54.7%
3999124 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.52 36.0 3.62e-01 75.0% 93.3%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.94e-01 98.2% 93.3%
4938120 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 39.0 3.63e-01 100.0% 65.7%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 38.0 3.63e-01 100.0% 69.2%
3635617 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 37.0 4.09e-01 82.1% 100.0%
D4 medium residues 163-221
PDB
Domain cluster: rep: MT104122.1__QIG62564.1__X__00050__D171-224
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 31.0 3.06e-01 79.7% 46.8%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 45.0 4.68e-01 86.4% 100.0%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 43.0 3.59e-01 88.1% 89.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 39.0 4.25e-01 94.9% 95.8%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.72e-01 100.0% 83.2%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 43.0 2.68e-01 98.3% 60.5%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 30.0 3.48e-01 79.7% 84.2%
4bzyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.36e-01 89.8% 63.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.07e-01 96.6% 76.7%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.32e-01 88.1% 58.9%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 37.0 3.82e-01 100.0% 90.7%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 39.0 3.91e-01 84.7% 89.8%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 41.0 3.73e-01 94.9% 86.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 78.0 7.32e-01 100.0% 84.1%
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 53.0 5.28e-01 100.0% 81.7%
3289062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 4.03e-01 84.7% 84.4%
4065428 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.57 37.0 3.82e-01 88.1% 70.9%
3260618 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.54 46.0 3.76e-01 100.0% 80.0%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.54 39.0 3.24e-01 79.7% 88.7%
4938888 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 45.0 3.65e-01 96.6% 77.5%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.54 45.0 3.10e-01 98.3% 35.8%
4204988 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 31.0 2.61e-01 84.7% 29.1%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.53 45.0 3.30e-01 94.9% 77.4%
5070184 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 41.0 3.42e-01 89.8% 91.8%
5004414 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 41.0 3.36e-01 89.8% 95.7%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.52 42.0 4.04e-01 91.5% 81.4%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.51 37.0 3.31e-01 78.0% 98.8%
3967370 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.51 41.0 3.17e-01 96.6% 92.5%
3588447 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.51 43.0 2.90e-01 98.3% 98.3%
4890012 2484.1.1.209 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.51 36.0 2.78e-01 83.1% 33.6%
4940710 3174.2.1.0 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.51 43.0 4.21e-01 93.2% 100.0%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.51 35.0 2.93e-01 88.1% 41.0%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.50 42.0 3.97e-01 93.2% 85.7%