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KX228400.1__ANT45161.1__CDKM15_18__00018

Bact-Vir

KX228400.1__ANT45161.1__CDKM15_18__00018

Identity

Accession:
KX228400 ↗
Kingdom:
phage

Quality

63.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Colneyvirus› Clostridium_phage_CDKM15

TaxID: 1868595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-240
PDB
Domain cluster: rep: OK247671.1__UCR75233.1__BG3P_19__00019__DFULL
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27000.1 best PH_gly_zipper 45.6 7.30e-12 83.6% 77.3%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 48.0 5.61e-01 100.0% 83.0%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 48.0 5.44e-01 100.0% 81.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 46.0 4.85e-01 100.0% 66.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 51.0 5.25e-01 100.0% 72.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.73 51.0 5.50e-01 100.0% 84.6%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 46.0 5.17e-01 100.0% 82.8%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 4.49e-01 100.0% 59.9%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 5.14e-01 100.0% 79.5%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 5.43e-01 100.0% 83.7%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 5.38e-01 100.0% 89.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 28.0 3.88e-01 96.7% 100.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 28.0 3.89e-01 97.5% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 29.0 3.89e-01 98.4% 100.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.51 40.0 3.86e-01 100.0% 74.3%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.51 39.0 3.15e-01 82.0% 96.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 50.0 5.71e-01 100.0% 83.3%
3870514 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.79 47.0 4.92e-01 100.0% 64.3%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.79 47.0 5.12e-01 100.0% 70.5%
4964695 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.76 52.0 5.17e-01 100.0% 68.0%
5007104 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.74 53.0 5.68e-01 100.0% 84.8%
3614844 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.74 52.0 4.96e-01 100.0% 62.9%
3516854 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 51.0 5.29e-01 100.0% 76.5%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.72 54.0 4.74e-01 100.0% 55.3%
3178227 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.70 53.0 3.78e-01 100.0% 27.9%
4275948 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.70 51.0 5.21e-01 100.0% 76.7%
3865654 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.69 51.0 5.23e-01 100.0% 79.2%
3913071 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.68 53.0 5.08e-01 100.0% 71.4%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.67 50.0 5.21e-01 99.2% 82.6%
3235213 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 5.58e-01 100.0% 85.4%
3593636 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 47.0 4.98e-01 100.0% 82.7%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 35.0 4.67e-01 100.0% 100.0%
3884809 220.1.1.18 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.65 55.0 4.98e-01 100.0% 69.0%
3686517 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.63 52.0 4.64e-01 100.0% 63.6%
3707991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 56.0 5.22e-01 100.0% 85.3%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 28.0 3.57e-01 92.6% 74.3%
3784739 220.1.1.179 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran-binding 0.59 55.0 4.33e-01 100.0% 54.0%
4965124 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.14e-01 100.0% 69.7%
5040676 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.68e-01 100.0% 21.2%
D2 medium residues 1-116
PDB
D3 medium residues 254-304
PDB
Domain cluster: rep: IMGVR_UViG_3300038365_000206-3300038365-Ga0134850_000025_80023_80508__D113-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09851.15 best SHOCT 40.3 2.60e-10 54.9% 89.3%