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KX245890.1__ANS06088.1__ABCD_0098__00099

Bact-Vir

KX245890.1__ANS06088.1__ABCD_0098__00099

Identity

Accession:
KX245890 ↗
Kingdom:
phage

Quality

58.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-61
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.79 56.0 4.73e-01 75.0% 49.4%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.75 64.0 4.92e-01 96.4% 89.7%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.70 59.0 3.91e-01 94.6% 59.7%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.69 56.0 4.78e-01 94.6% 75.8%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.69 58.0 4.66e-01 96.4% 69.8%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.69 49.0 3.42e-01 75.0% 48.3%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.68 58.0 5.30e-01 100.0% 82.3%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 3.91e-01 80.4% 71.1%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.67 55.0 3.97e-01 91.1% 70.4%
2hv2A03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 50.0 3.65e-01 80.4% 62.4%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.65 44.0 3.04e-01 100.0% 21.4%
2qecA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 48.0 3.36e-01 82.1% 68.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 49.0 4.69e-01 96.4% 72.7%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.63 39.0 4.10e-01 100.0% 68.6%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 45.0 3.20e-01 76.8% 33.3%
4fd5A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 45.0 3.06e-01 78.6% 67.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 51.0 3.62e-01 92.9% 39.0%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 46.0 3.03e-01 80.4% 51.2%
1iq8A03 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.62 44.0 4.01e-01 98.2% 56.8%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 45.0 3.27e-01 78.6% 61.9%
5gi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 45.0 3.04e-01 78.6% 67.6%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 3.38e-01 87.5% 70.7%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 45.0 3.27e-01 78.6% 57.9%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 44.0 3.23e-01 76.8% 61.2%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 36.0 4.28e-01 87.5% 91.9%
1wr8A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.61 50.0 3.67e-01 96.4% 56.5%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 48.0 3.56e-01 87.5% 79.7%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 45.0 3.70e-01 82.1% 85.0%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.60 43.0 3.72e-01 76.8% 70.3%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 47.0 3.33e-01 87.5% 74.0%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.77e-01 96.4% 47.0%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.30e-01 87.5% 79.3%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.59 47.0 3.80e-01 89.3% 72.6%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.46e-01 87.5% 77.2%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 51.0 3.66e-01 100.0% 94.4%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 37.0 3.85e-01 100.0% 68.6%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.03e-01 87.5% 55.9%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 47.0 3.42e-01 100.0% 96.1%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 48.0 3.47e-01 98.2% 94.9%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 49.0 3.67e-01 98.2% 45.7%
3ghaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.17e-01 89.3% 81.2%
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.56 46.0 3.75e-01 98.2% 95.8%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 3.00e-01 92.9% 56.8%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 44.0 2.98e-01 100.0% 21.8%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 2.98e-01 80.4% 57.3%
3qb8A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 2.78e-01 76.8% 65.5%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 2.78e-01 98.2% 57.0%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.16e-01 82.1% 65.0%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.54 42.0 4.05e-01 91.1% 95.5%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.54 45.0 3.81e-01 92.9% 60.9%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.12e-01 100.0% 26.2%
1pvdA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.54 44.0 3.26e-01 91.1% 73.4%
1zpdA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.53 43.0 3.22e-01 96.4% 75.5%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 43.0 3.21e-01 98.2% 97.1%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.53e-01 94.6% 54.5%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.63e-01 92.9% 61.6%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 45.0 3.13e-01 96.4% 76.1%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.08e-01 100.0% 90.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.50 35.0 3.60e-01 100.0% 82.4%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.50 40.0 3.89e-01 85.7% 87.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4200177 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.81 55.0 4.14e-01 71.4% 42.3%
4031984 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.81 56.0 4.27e-01 73.2% 44.8%
4226766 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.80 56.0 4.19e-01 73.2% 45.4%
4670927 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.77 42.0 2.72e-01 85.7% 12.5%
5069690 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.72 46.0 4.42e-01 100.0% 56.9%
3261558 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.70 51.0 3.85e-01 80.4% 90.2%
3222713 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 58.0 4.90e-01 100.0% 60.0%
4161009 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.67 52.0 4.84e-01 94.6% 67.1%
4067273 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 53.0 3.88e-01 92.9% 44.2%
3705011 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.66 49.0 3.05e-01 80.4% 22.2%
3529940 292.2.1.11 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34_2nd 0.66 53.0 4.44e-01 89.3% 65.6%
4463651 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.66 52.0 4.20e-01 85.7% 77.1%
3714578 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.66 48.0 3.19e-01 78.6% 37.3%
3231261 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 54.0 3.47e-01 91.1% 20.8%
1780243 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.65 56.0 3.60e-01 96.4% 24.2%
4380974 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.65 51.0 3.71e-01 87.5% 34.4%
4102120 220.1.1.190 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.64 50.0 3.91e-01 85.7% 55.8%
5049330 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 47.0 3.39e-01 80.4% 62.0%
1822898 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.63 50.0 3.62e-01 91.1% 79.3%
3948011 3816.1.1.1 beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.62 44.0 3.95e-01 75.0% 96.2%
3973012 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.62 53.0 4.27e-01 100.0% 71.3%
4034417 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 45.0 3.21e-01 78.6% 61.2%
3594456 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 46.0 2.98e-01 83.9% 27.2%
4301684 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.60 49.0 3.50e-01 92.9% 37.7%
3939817 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.60 46.0 2.61e-01 96.4% 6.9%
3974177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.90e-01 89.3% 78.1%
4591362 702.1.1.4 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.59 45.0 3.08e-01 82.1% 32.6%
5063947 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 46.0 3.37e-01 87.5% 74.4%
3576534 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.59 47.0 3.45e-01 96.4% 85.6%
3965232 897.2.1.2 a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › CNP1 0.58 45.0 3.42e-01 85.7% 79.3%
4053431 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.58 46.0 4.68e-01 85.7% 90.9%
3730194 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.58 46.0 3.37e-01 98.2% 69.6%
2549340 3735.1.1.5 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TTc_toxin_rep 0.57 48.0 2.76e-01 100.0% 50.8%
1489661 3935.1.1.1 extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP 0.57 31.0 3.40e-01 75.0% 60.0%
3574435 386.1.1.18 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.55 40.0 4.10e-01 78.6% 86.3%
5007759 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 48.0 3.84e-01 100.0% 73.7%
3660003 5.1.10.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.54 44.0 3.91e-01 89.3% 72.5%
3214343 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.48e-01 100.0% 51.1%
4121242 213.1.1.3 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Autoind_synth 0.53 46.0 3.21e-01 98.2% 75.7%
3897826 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.53 42.0 3.33e-01 87.5% 48.7%
2553126 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.53 42.0 3.90e-01 94.6% 89.7%
4543449 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.52 46.0 3.02e-01 98.2% 25.7%
5045169 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.52 40.0 3.11e-01 87.5% 77.1%
4679863 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 33.0 3.64e-01 78.6% 82.2%
4992891 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.52 44.0 3.63e-01 92.9% 56.0%
None 0.52 37.0 2.49e-01 75.0% 48.0%
None 0.51 40.0 2.80e-01 98.2% 87.2%