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KX257490.2__ANJ65519.1__X__00012

Bact-Vir

KX257490.2__ANJ65519.1__X__00012

Identity

Accession:
KX257490 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_virus_vB_PspP-H6/1

TaxID: 1852626

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-108
PDB
Domain cluster: rep: NC_013599.1__YP_003344925.1__Xfas53_gene35__00035__D4-118
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.86 82.0 7.19e-01 100.0% 73.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 41.0 4.70e-01 87.5% 90.4%
7kypE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 48.0 3.81e-01 99.0% 38.2%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 46.0 3.53e-01 99.0% 33.5%
4r78A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.59 42.0 3.52e-01 76.0% 83.8%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 39.0 4.53e-01 95.2% 100.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 45.0 4.06e-01 83.7% 89.7%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.31e-01 92.3% 89.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 35.0 3.85e-01 88.5% 75.3%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.57 42.0 3.29e-01 78.8% 59.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.55 30.0 3.75e-01 96.2% 88.7%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 43.0 3.89e-01 86.5% 88.7%
1wnvB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 38.0 3.09e-01 73.1% 91.4%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.54 39.0 3.39e-01 76.0% 75.0%
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 47.0 3.98e-01 97.1% 61.1%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 40.0 3.76e-01 77.9% 90.7%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.53 37.0 3.53e-01 75.0% 60.2%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.79e-01 83.7% 87.9%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 42.0 3.73e-01 88.5% 61.0%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.52 38.0 3.59e-01 77.9% 63.2%
2nsaA00 1.10.3120.10 Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain 0.51 32.0 2.82e-01 72.1% 39.5%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.50 39.0 3.97e-01 87.5% 81.9%
1wyrA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.50 38.0 3.60e-01 98.1% 67.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3108018 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.90 86.0 7.39e-01 100.0% 74.3%
1429455 4275.1.1.4 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › P22_Tail-4 0.87 83.0 7.23e-01 100.0% 73.3%
3196093 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 50.0 4.21e-01 92.3% 89.1%
3878148 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.59 40.0 3.25e-01 70.2% 40.0%
3686644 1075.1.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF3533 0.57 44.0 3.67e-01 81.7% 49.1%
3982882 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.55 42.0 3.37e-01 79.8% 44.7%
4997392 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.54 37.0 3.34e-01 70.2% 77.9%
3947843 5051.1.1.2 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease 0.53 39.0 2.66e-01 79.8% 60.9%
3691337 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.53 46.0 3.62e-01 94.2% 81.4%
3574952 604.28.1.0 ↗ alpha bundles › Spectrin repeat-like › E3 ubiquitin-protein ligase SHPRH second helical domain › E3 ubiquitin-protein ligase SHPRH second helical domain 0.53 42.0 3.45e-01 90.4% 72.1%
3622578 604.28.1.1 ↗ alpha bundles › Spectrin repeat-like › E3 ubiquitin-protein ligase SHPRH second helical domain › E3 ubiquitin-protein ligase SHPRH second helical domain › SHPRH_helical-2nd 0.52 43.0 3.38e-01 93.3% 75.0%
3612019 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 36.0 3.78e-01 73.1% 87.8%
3258502 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.51 39.0 3.19e-01 82.7% 89.3%