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KX268652.1__ANT40742.1__TRS1_30__00030

Bact-Vir

KX268652.1__ANT40742.1__TRS1_30__00030

Identity

Accession:
KX268652 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_vB_AbaS_TRS1

TaxID: 1852629

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lnrA00 1.20.120.1530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 50.0 3.80e-01 83.3% 56.9%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.60 44.0 2.87e-01 80.3% 33.4%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.57 49.0 3.15e-01 93.9% 20.5%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.57 39.0 3.15e-01 72.7% 97.8%
3mcwA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.55 35.0 2.51e-01 78.8% 21.5%
3tu3B03 1.20.1050.100 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 46.0 3.46e-01 100.0% 83.5%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 41.0 3.28e-01 93.9% 91.6%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 39.0 2.73e-01 86.4% 59.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938247 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.80 41.0 2.77e-01 74.2% 15.7%
3721501 101.1.17.23 ↗ alpha arrays › HTH › HTH › FF domain › PF26803 0.75 46.0 3.33e-01 95.5% 22.8%
165164 2498.1.1.7 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N 0.64 55.0 3.60e-01 100.0% 57.9%
4282188 5059.1.1.59 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EmrE 0.58 49.0 3.22e-01 97.0% 34.2%
3690576 5001.1.1.32 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.56 47.0 3.06e-01 100.0% 52.1%
3250585 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.55 47.0 2.83e-01 100.0% 29.1%
4441223 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.54 42.0 3.26e-01 84.8% 63.3%
3250267 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.54 44.0 3.11e-01 92.4% 60.0%
4936900 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.53 48.0 2.77e-01 100.0% 79.5%
3250268 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.06e-01 92.4% 52.3%
3271981 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 3.21e-01 87.9% 50.3%
3289475 3978.1.1.2 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_hydroxylase 0.52 43.0 3.10e-01 90.9% 39.0%
3245774 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.52 43.0 2.69e-01 95.5% 23.5%
3417987 601.1.2.8 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PGG 0.52 40.0 3.33e-01 95.5% 47.8%
3250588 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.51 35.0 3.16e-01 72.7% 71.6%
3271233 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.51 42.0 2.69e-01 93.9% 53.6%
2120488 7581.1.1.2 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt 0.50 39.0 2.49e-01 87.9% 40.9%
D2 medium residues 74-118
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02839.20 best CBM_5_12 26.5 7.00e-06 95.6% 68.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.87 81.0 6.16e-01 100.0% 47.4%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.86 71.0 7.02e-01 100.0% 85.4%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 72.0 7.27e-01 97.8% 97.8%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 69.0 6.64e-01 100.0% 80.4%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 68.0 5.82e-01 100.0% 57.5%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.81 71.0 6.43e-01 100.0% 90.2%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.71 64.0 5.71e-01 100.0% 80.6%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 50.0 5.08e-01 93.3% 81.8%
3k3sH01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.66 54.0 4.50e-01 93.3% 87.8%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 48.0 4.17e-01 80.0% 93.1%
4n0qA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 50.0 3.49e-01 100.0% 27.3%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 45.0 3.79e-01 95.6% 46.3%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.79e-01 82.2% 55.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 3.23e-01 77.8% 39.2%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 3.46e-01 77.8% 51.8%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 44.0 3.59e-01 97.8% 43.7%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.58 47.0 3.85e-01 97.8% 83.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.47e-01 100.0% 68.2%
3hiaA00 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.57 38.0 3.43e-01 95.6% 47.0%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 48.0 3.90e-01 100.0% 74.7%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.55 41.0 3.74e-01 88.9% 94.2%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 39.0 3.01e-01 80.0% 57.7%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 43.0 3.28e-01 97.8% 89.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.80e-01 100.0% 63.1%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.54 38.0 3.78e-01 88.9% 71.7%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 44.0 3.15e-01 97.8% 48.0%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 2.69e-01 80.0% 36.5%
1pvdA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.52 33.0 2.39e-01 100.0% 16.9%
7ecrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 2.86e-01 100.0% 41.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.75e-01 100.0% 66.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.89 83.0 7.45e-01 100.0% 76.3%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.88 82.0 7.41e-01 100.0% 77.6%
4026053 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.87 64.0 6.70e-01 86.7% 87.5%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.87 71.0 6.87e-01 100.0% 80.0%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 80.0 7.87e-01 100.0% 93.8%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 80.0 7.55e-01 100.0% 88.7%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 79.0 7.88e-01 97.8% 95.7%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.86 74.0 6.44e-01 100.0% 64.6%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 69.0 6.53e-01 100.0% 75.9%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 68.0 5.82e-01 100.0% 57.5%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 74.0 6.73e-01 100.0% 93.2%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 72.0 6.95e-01 100.0% 88.0%
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 66.0 6.80e-01 100.0% 95.3%
3524959 391.1.1.8 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWF 0.81 49.0 5.45e-01 93.3% 80.0%
3899335 356.1.1.2 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors › VWF 0.81 49.0 5.45e-01 93.3% 80.0%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 71.0 6.58e-01 97.8% 90.9%
3976685 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 71.0 6.66e-01 100.0% 90.7%
3975892 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.78 68.0 6.39e-01 97.8% 96.4%
3412645 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.77 57.0 4.91e-01 86.7% 51.4%
3981632 70.4.1.9 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.77 55.0 5.82e-01 95.6% 87.5%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.74 64.0 6.20e-01 100.0% 88.0%
3582045 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.73 50.0 5.52e-01 95.6% 91.4%
3516371 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.71 58.0 4.30e-01 91.1% 37.4%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.71 61.0 5.48e-01 100.0% 73.4%
4020598 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.71 50.0 2.83e-01 100.0% 7.0%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.70 59.0 5.75e-01 97.8% 94.0%
4996605 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.67 57.0 4.67e-01 93.3% 76.2%
3572917 356.1.1.0 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors 0.67 42.0 4.59e-01 93.3% 90.0%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.66 55.0 4.96e-01 100.0% 68.7%
5015989 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.66 50.0 4.71e-01 95.6% 67.3%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.66 50.0 4.57e-01 95.6% 61.7%
4956395 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.65 51.0 4.76e-01 95.6% 69.1%
3519410 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.65 46.0 4.94e-01 95.6% 87.2%
1320675 304.157.1.1 ↗ a+b two layers › Alpha-beta plaits › uncharacterized protein 201phi2-1p060 › uncharacterized protein 201phi2-1p060 › DUF6837 0.65 47.0 4.08e-01 80.0% 91.8%
5009746 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.62 49.0 4.32e-01 95.6% 58.7%
3520959 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 43.0 4.69e-01 95.6% 91.4%
4169889 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.61 50.0 4.38e-01 95.6% 67.1%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 51.0 4.51e-01 100.0% 66.2%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 49.0 4.41e-01 100.0% 67.7%
7161 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.58 44.0 3.59e-01 97.8% 43.7%
5041150 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.58 51.0 4.40e-01 97.8% 71.4%
5022325 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.58 47.0 3.72e-01 95.6% 54.0%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 49.0 4.37e-01 100.0% 67.7%
5042815 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.57 48.0 4.01e-01 95.6% 63.7%
3619978 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 44.0 2.67e-01 86.7% 27.0%
5041151 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.57 46.0 4.09e-01 95.6% 71.4%
3585186 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 39.0 4.18e-01 95.6% 94.3%
2761575 51.1.1.2 ↗ beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 0.54 40.0 3.67e-01 88.9% 94.2%
D3 medium residues 152-277
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wp8A02 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.91 67.0 6.18e-01 100.0% 61.8%
1p9hA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.82 64.0 5.53e-01 100.0% 56.4%
3s6lD00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.81 65.0 5.95e-01 100.0% 66.5%
3ultA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.80 66.0 6.93e-01 100.0% 93.0%
2yo3A02 2.60.40.4050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.79 33.0 5.04e-01 83.3% 92.6%
2xqhA01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.79 66.0 6.44e-01 100.0% 80.0%
2yo0A01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.72 52.0 4.75e-01 94.4% 58.5%
4ea9A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.70 58.0 6.17e-01 97.6% 100.0%
3ntnB01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.68 65.0 5.84e-01 100.0% 79.4%
4e79A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.64 60.0 5.01e-01 100.0% 73.8%
2rijA03 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.59 54.0 4.85e-01 100.0% 86.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033305 208.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.97 73.0 6.60e-01 100.0% 60.6%
1503827 208.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.91 67.0 5.20e-01 100.0% 39.7%
4225149 3512.1.1.0 ↗ beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.90 63.0 5.12e-01 100.0% 42.4%
4593120 208.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.83 67.0 5.85e-01 100.0% 59.4%
3984088 208.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.82 65.0 5.33e-01 100.0% 49.0%
1834008 3512.1.1.0 ↗ beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.81 65.0 5.95e-01 100.0% 66.5%
5055775 208.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.81 68.0 5.34e-01 100.0% 47.4%
1146565 208.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › LbR_Ice_bind 0.80 66.0 6.93e-01 100.0% 93.0%
1842566 208.2.1.4 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.78 67.0 5.09e-01 100.0% 43.2%
3965888 208.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.68 60.0 5.00e-01 91.3% 58.5%
4570556 208.1.1.20 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.65 60.0 4.73e-01 100.0% 55.2%
3985064 3512.1.1.0 ↗ beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.55 34.0 3.44e-01 95.2% 61.6%
5056741 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.55 49.0 4.38e-01 96.8% 90.9%
D4 medium residues 278-397
PDB
Domain cluster: representative
D5 medium residues 409-471
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.74 53.0 3.97e-01 84.1% 32.0%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.72 66.0 4.69e-01 100.0% 75.0%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 50.0 3.84e-01 84.1% 33.3%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.70 64.0 4.69e-01 100.0% 77.8%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.70 63.0 4.61e-01 98.4% 76.4%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 61.0 4.39e-01 100.0% 76.5%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.68 60.0 4.22e-01 96.8% 33.7%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.68 58.0 4.43e-01 96.8% 99.3%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 45.0 3.52e-01 71.4% 52.9%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 58.0 4.22e-01 100.0% 75.0%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 59.0 4.23e-01 100.0% 76.5%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 59.0 4.27e-01 100.0% 76.9%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 52.0 3.91e-01 85.7% 54.3%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 49.0 3.46e-01 81.0% 49.0%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 58.0 4.24e-01 98.4% 82.2%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 3.84e-01 84.1% 38.2%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.64 44.0 3.18e-01 71.4% 69.0%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 46.0 3.26e-01 77.8% 41.3%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 50.0 3.61e-01 85.7% 58.6%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 55.0 4.06e-01 100.0% 77.0%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.63 56.0 3.63e-01 96.8% 24.3%
4c1wA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.37e-01 81.0% 55.9%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 43.0 3.08e-01 73.0% 41.1%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.62 53.0 3.99e-01 95.2% 75.0%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 50.0 3.56e-01 95.2% 28.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.61 54.0 4.03e-01 98.4% 75.5%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.61 53.0 3.83e-01 98.4% 86.8%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 4.13e-01 87.3% 93.1%
1ciyA02 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.60 40.0 2.94e-01 71.4% 71.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 3.86e-01 98.4% 59.6%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.59 51.0 4.02e-01 98.4% 46.5%
1j9aA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 3.08e-01 77.8% 47.3%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.30e-01 100.0% 93.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 44.0 3.96e-01 95.2% 58.9%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 46.0 3.65e-01 95.2% 48.3%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 50.0 3.26e-01 98.4% 44.1%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.57 42.0 3.94e-01 85.7% 63.6%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 45.0 3.27e-01 93.7% 58.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 4.07e-01 85.7% 66.7%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.64e-01 85.7% 49.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 46.0 3.91e-01 95.2% 75.2%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.54 41.0 3.46e-01 85.7% 53.9%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 34.0 2.68e-01 92.1% 29.1%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.54 44.0 3.38e-01 90.5% 39.3%
8hbfB02 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.54 46.0 3.70e-01 100.0% 72.2%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.53 44.0 3.76e-01 100.0% 75.2%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.65e-01 96.8% 94.4%
2e1qC05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 42.0 3.60e-01 100.0% 72.0%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.38e-01 100.0% 85.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.87 73.0 4.72e-01 92.1% 24.3%
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.77 60.0 5.95e-01 100.0% 80.0%
3737880 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.74 51.0 3.57e-01 82.5% 23.7%
3273079 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.74 57.0 5.04e-01 95.2% 58.4%
3842370 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.73 67.0 4.77e-01 100.0% 76.6%
3537454 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.72 65.0 4.62e-01 100.0% 75.6%
3553889 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.71 65.0 4.51e-01 100.0% 69.2%
3521727 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.71 65.0 4.56e-01 100.0% 74.1%
1162187 233.1.1.8 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.70 64.0 4.55e-01 100.0% 69.5%
3433185 1094.1.1.0 ↗ a/b three-layered sandwiches › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain 0.70 62.0 4.28e-01 98.4% 31.2%
3189451 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 46.0 3.77e-01 87.3% 39.1%
3744672 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.69 60.0 4.44e-01 96.8% 42.4%
4022543 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.68 61.0 4.05e-01 98.4% 41.3%
5022396 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.68 51.0 4.68e-01 82.5% 62.5%
None — 0.67 53.0 3.00e-01 84.1% 12.1%
3834820 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.65 47.0 3.38e-01 76.2% 35.4%
3820812 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 47.0 3.47e-01 76.2% 38.7%
3278010 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.64 50.0 3.67e-01 84.1% 65.0%
3463123 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.64 54.0 3.49e-01 95.2% 58.6%
3297037 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.63 46.0 3.20e-01 77.8% 31.9%
3688459 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.63 46.0 3.09e-01 77.8% 28.6%
4016749 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.62 47.0 2.94e-01 84.1% 28.2%
4408002 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.62 53.0 3.61e-01 92.1% 48.6%
3541447 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 54.0 3.87e-01 98.4% 49.4%
3656110 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.60 48.0 3.00e-01 87.3% 17.4%
3889236 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.60 47.0 3.70e-01 90.5% 38.6%
3779302 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.60 53.0 3.39e-01 100.0% 44.4%
3394354 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.60 53.0 4.52e-01 98.4% 85.0%
3316523 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.59 43.0 2.93e-01 77.8% 28.2%
3330582 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 45.0 3.80e-01 90.5% 60.0%
3217309 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.58 51.0 4.57e-01 98.4% 92.2%
4323378 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.58 48.0 3.18e-01 95.2% 25.5%
3871129 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.58 47.0 3.45e-01 96.8% 38.5%
3847935 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.57 47.0 3.46e-01 96.8% 39.5%
4544843 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.57 47.0 3.76e-01 93.7% 80.7%
3938022 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.96e-01 100.0% 39.5%
3621625 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 2.78e-01 73.0% 28.5%
3226038 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 43.0 3.33e-01 95.2% 36.1%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 46.0 3.34e-01 98.4% 37.4%
3889557 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.54 47.0 3.30e-01 98.4% 77.4%
3928561 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 47.0 3.21e-01 95.2% 59.1%
5037762 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.54 42.0 3.36e-01 95.2% 59.4%
1033236 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.54 46.0 4.43e-01 100.0% 86.5%
4000493 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.53 47.0 3.45e-01 100.0% 38.9%
3311773 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 43.0 2.64e-01 95.2% 82.7%
3709836 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 45.0 3.19e-01 95.2% 49.2%
4002044 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 46.0 2.94e-01 100.0% 60.6%
4024811 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 43.0 2.87e-01 95.2% 21.4%
3953498 4.1.1.439 ↗ beta barrels › SH3 › SH3 › SH3 › PF26205 0.51 34.0 3.24e-01 71.4% 58.7%
3471584 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.50 42.0 2.54e-01 95.2% 96.2%
3287981 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.50 40.0 3.85e-01 93.7% 88.0%
D6 medium residues 472-525
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qc7A02 6.10.140.1630 Special › Helix non-globular › Helix Hairpins › 0.68 54.0 5.53e-01 92.6% 92.2%
2oxaA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.61 43.0 2.57e-01 74.1% 71.4%
3qkiB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 47.0 2.86e-01 98.1% 47.6%
2qvpC00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 2.88e-01 92.6% 78.4%