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KX278418.2__ANT45307.1__PP16_gp07__00007

Bact-Vir

KX278418.2__ANT45307.1__PP16_gp07__00007

Identity

Accession:
KX278418 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Kotilavirus› Pectobacterium_phage_PP16

TaxID: 1873958

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.26e-01 81.6% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.69 52.0 4.61e-01 100.0% 54.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.59e-01 88.2% 96.8%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 5.06e-01 82.9% 89.8%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.21e-01 88.2% 88.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 52.0 5.15e-01 86.8% 100.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.65 50.0 4.58e-01 90.8% 63.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.50e-01 85.5% 76.8%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 54.0 4.19e-01 98.7% 63.8%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 45.0 4.94e-01 82.9% 96.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.97e-01 82.9% 89.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.91e-01 90.8% 86.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.83e-01 84.2% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.87e-01 85.5% 100.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 52.0 3.94e-01 93.4% 80.9%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 53.0 4.45e-01 100.0% 58.2%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.66e-01 89.5% 77.8%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 52.0 4.50e-01 100.0% 90.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 52.0 4.54e-01 100.0% 87.1%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.61 46.0 4.35e-01 85.5% 66.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.98e-01 80.3% 100.0%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 4.78e-01 96.1% 92.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 4.47e-01 100.0% 74.4%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.89e-01 90.8% 97.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 3.93e-01 85.5% 76.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.18e-01 85.5% 82.3%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.39e-01 85.5% 83.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.20e-01 90.8% 87.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.74e-01 89.5% 98.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.15e-01 86.8% 85.3%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 3.19e-01 97.4% 93.4%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.94e-01 80.3% 77.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 4.30e-01 81.6% 100.0%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 45.0 3.06e-01 97.4% 92.5%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 3.15e-01 97.4% 84.4%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.54 45.0 4.24e-01 94.7% 86.6%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.68e-01 78.9% 86.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 39.0 3.60e-01 89.5% 58.4%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 38.0 3.29e-01 76.3% 97.5%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.74e-01 90.8% 73.9%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 42.0 3.75e-01 90.8% 100.0%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.95e-01 97.4% 94.7%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 2.72e-01 93.4% 17.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 4.17e-01 89.5% 100.0%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.25e-01 96.1% 63.6%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 3.33e-01 80.3% 92.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.55e-01 81.6% 89.2%
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.70e-01 84.2% 88.6%
3819340 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.70 52.0 4.48e-01 85.5% 50.0%
3348456 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.70 52.0 5.73e-01 85.5% 100.0%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.70 52.0 4.51e-01 86.8% 52.2%
3774821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.62e-01 85.5% 98.3%
3820066 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.63e-01 84.2% 98.3%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.55e-01 85.5% 98.3%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.69 50.0 3.83e-01 85.5% 33.7%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.68 54.0 4.70e-01 85.5% 99.1%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.67 50.0 4.76e-01 90.8% 66.7%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 3.57e-01 81.6% 31.4%
4024914 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.66 44.0 4.83e-01 82.9% 86.7%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.42e-01 86.8% 100.0%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.04e-01 89.5% 91.1%
3275832 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.65 45.0 5.06e-01 80.3% 100.0%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.65 49.0 5.05e-01 86.8% 84.9%
3511277 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.20e-01 88.2% 83.7%
4669027 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 55.0 4.00e-01 100.0% 75.0%
4995677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.89e-01 84.2% 100.0%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.09e-01 89.5% 88.0%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.64 49.0 5.16e-01 88.2% 96.9%
3598285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.17e-01 90.8% 92.9%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 46.0 5.06e-01 84.2% 98.3%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.41e-01 93.4% 55.8%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.66e-01 82.9% 84.3%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.41e-01 88.2% 78.8%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.76e-01 84.2% 100.0%
3296833 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.61 49.0 4.03e-01 86.8% 82.6%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.95e-01 81.6% 100.0%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.61 50.0 4.21e-01 90.8% 91.5%
3620554 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.43e-01 85.5% 71.6%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 48.0 4.75e-01 86.8% 83.7%
3613878 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 52.0 3.68e-01 98.7% 93.3%
4184660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.40e-01 98.7% 91.5%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.54e-01 86.8% 85.9%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.72e-01 84.2% 100.0%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.89e-01 97.4% 95.7%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.73e-01 89.5% 91.4%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 45.0 4.77e-01 85.5% 96.9%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.72e-01 88.2% 95.6%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.36e-01 94.7% 89.6%
3930311 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.58 43.0 3.78e-01 81.6% 75.8%
3270570 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 43.0 3.81e-01 81.6% 72.2%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.53e-01 82.9% 100.0%
3770197 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.57 42.0 3.49e-01 80.3% 85.5%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.56 50.0 4.38e-01 100.0% 97.4%
3269834 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.56 41.0 3.58e-01 78.9% 72.8%
5057234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.60e-01 86.8% 95.7%
3103203 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.56 49.0 4.65e-01 98.7% 100.0%
3703934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.10e-01 82.9% 90.0%
4648652 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.55 44.0 3.99e-01 86.8% 68.6%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.08e-01 78.9% 98.2%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.36e-01 84.2% 100.0%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.55 45.0 3.17e-01 97.4% 91.0%
3246201 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 3.08e-01 97.4% 92.1%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 46.0 4.51e-01 97.4% 100.0%
3676439 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.90e-01 97.4% 75.8%
3362301 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.94e-01 97.4% 88.4%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.52 43.0 3.05e-01 98.7% 56.8%
3472537 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.85e-01 97.4% 94.3%
3366188 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.52 43.0 2.95e-01 97.4% 88.9%
4875314 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 40.0 3.52e-01 89.5% 76.7%