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KX278418.2__ANT45327.1__PP16_gp28__00028
Bact-VirKX278418.2__ANT45327.1__PP16_gp28__00028
Identity
- Accession:
- KX278418 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Kotilavirus›
Pectobacterium_phage_PP16
TaxID: 1873958
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ofcX04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 65.0 | 5.47e-01 | 98.3% | 67.0% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 57.0 | 5.34e-01 | 100.0% | 75.7% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.66 | 46.0 | 3.93e-01 | 79.7% | 45.7% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 47.0 | 4.62e-01 | 78.0% | 68.3% |
| 6xwtA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.66 | 57.0 | 5.29e-01 | 100.0% | 78.4% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 57.0 | 3.64e-01 | 98.3% | 51.5% |
| 2x6hA03 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.63 | 50.0 | 3.45e-01 | 88.1% | 39.0% |
| 4iejA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 47.0 | 4.39e-01 | 81.4% | 100.0% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 51.0 | 3.96e-01 | 100.0% | 56.4% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 48.0 | 3.44e-01 | 91.5% | 64.7% |
| 6mgiA03 | 1.20.1440.90 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain | 0.58 | 51.0 | 3.83e-01 | 96.6% | 55.5% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 40.0 | 2.64e-01 | 79.7% | 24.0% |
| 7k36H01 | 1.20.140.30 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator | 0.54 | 46.0 | 3.39e-01 | 96.6% | 65.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267193 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.73 | 62.0 | 4.96e-01 | 100.0% | 52.3% |
| 3684698 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.73 | 55.0 | 4.04e-01 | 94.9% | 31.0% |
| 5006970 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.73 | 54.0 | 3.98e-01 | 100.0% | 32.9% |
| 3229806 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.73 | 60.0 | 4.78e-01 | 89.8% | 93.0% |
| 4843075 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.73 | 46.0 | 3.82e-01 | 86.4% | 39.6% |
| 3177851 | 148.1.1.3 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C | 0.69 | 60.0 | 4.94e-01 | 96.6% | 59.0% |
| 3917720 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 55.0 | 4.16e-01 | 86.4% | 46.9% |
| 3186937 | 148.1.1.17 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-T_C | 0.66 | 57.0 | 4.63e-01 | 93.2% | 56.2% |
| 4332463 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.64 | 56.0 | 3.78e-01 | 100.0% | 26.7% |
| 3796545 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.64 | 52.0 | 5.02e-01 | 86.4% | 80.0% |
| 3685214 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.63 | 58.0 | 5.04e-01 | 98.3% | 85.9% |
| 3591474 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.62 | 55.0 | 3.64e-01 | 96.6% | 74.5% |
| 4013614 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.61 | 46.0 | 3.74e-01 | 79.7% | 43.1% |
| 3349750 | 3567.1.1.75 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA | 0.61 | 52.0 | 3.64e-01 | 100.0% | 62.9% |
| 3607008 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.61 | 52.0 | 4.42e-01 | 93.2% | 61.1% |
| 3440194 | 601.3.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PTPLA | 0.60 | 46.0 | 3.22e-01 | 88.1% | 32.1% |
| 4511885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 40.0 | 3.90e-01 | 71.2% | 70.8% |