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KX349284.1__AOO10015.1__W2390910_081__00076
Bact-VirKX349284.1__AOO10015.1__W2390910_081__00076
Identity
- Accession:
- KX349284 ↗
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nerrivikvirus›
Synechococcus_phage_S-RIM2
TaxID: 687800
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-34
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.81 | 60.0 | 4.69e-01 | 100.0% | 37.3% |
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.78 | 61.0 | 5.57e-01 | 100.0% | 63.6% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 48.0 | 3.70e-01 | 100.0% | 62.7% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.61 | 45.0 | 2.64e-01 | 100.0% | 8.7% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.59 | 41.0 | 2.79e-01 | 70.0% | 44.4% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.57 | 42.0 | 2.40e-01 | 100.0% | 48.7% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 40.0 | 3.09e-01 | 93.3% | 85.6% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.55 | 39.0 | 2.93e-01 | 73.3% | 24.2% |
| 5tuuA00 | 1.20.140.80 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP | 0.55 | 40.0 | 2.75e-01 | 96.7% | 17.4% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 38.0 | 2.75e-01 | 100.0% | 21.8% |
| 2bjiA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 40.0 | 2.73e-01 | 96.7% | 19.4% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 2.73e-01 | 80.0% | 49.5% |
| 3qyfA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.53 | 39.0 | 2.58e-01 | 93.3% | 66.1% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 38.0 | 3.11e-01 | 86.7% | 70.6% |
| 3w4rA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 42.0 | 3.25e-01 | 100.0% | 53.8% |
| 1pc6A00 | 1.10.3790.10 | Mainly Alpha › Orthogonal Bundle › NinB fold › NinB | 0.51 | 38.0 | 2.63e-01 | 96.7% | 25.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4639978 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.89 | 72.0 | 5.92e-01 | 100.0% | 50.9% |
| 4993713 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.88 | 69.0 | 5.77e-01 | 100.0% | 50.9% |
| 5050062 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.88 | 68.0 | 5.57e-01 | 100.0% | 46.7% |
| 5065458 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.87 | 67.0 | 5.49e-01 | 100.0% | 46.7% |
| 5031988 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.86 | 72.0 | 6.19e-01 | 100.0% | 60.0% |
| 4936825 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.86 | 68.0 | 5.84e-01 | 100.0% | 56.0% |
| 5031928 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.83 | 65.0 | 5.47e-01 | 100.0% | 50.9% |
| 5040491 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.83 | 65.0 | 5.05e-01 | 100.0% | 40.0% |
| 5070516 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.83 | 64.0 | 5.25e-01 | 100.0% | 46.7% |
| 4933873 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 62.0 | 5.32e-01 | 100.0% | 50.9% |
| 4962305 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 65.0 | 5.74e-01 | 100.0% | 60.0% |
| 4991158 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.81 | 60.0 | 5.50e-01 | 96.7% | 60.0% |
| 5032296 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 63.0 | 5.33e-01 | 100.0% | 50.9% |
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.80 | 63.0 | 4.20e-01 | 100.0% | 22.2% |
| 4928755 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 59.0 | 4.98e-01 | 100.0% | 46.7% |
| 5080671 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.79 | 61.0 | 4.90e-01 | 100.0% | 42.9% |
| 3588700 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 62.0 | 4.72e-01 | 100.0% | 40.0% |
| 5073296 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 58.0 | 5.29e-01 | 100.0% | 60.0% |
| 4994020 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.76 | 58.0 | 5.00e-01 | 100.0% | 51.7% |
| 5012493 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.70 | 51.0 | 4.74e-01 | 90.0% | 60.0% |
| 5030944 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.68 | 51.0 | 4.66e-01 | 93.3% | 60.0% |
| 4941368 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.67 | 50.0 | 4.95e-01 | 96.7% | 82.9% |
| 3577107 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 45.0 | 3.91e-01 | 70.0% | 39.6% |
| 3270612 | 4154.1.1.1 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP | 0.61 | 43.0 | 3.13e-01 | 93.3% | 22.9% |
| 3353072 | 4154.1.1.1 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP | 0.61 | 44.0 | 3.13e-01 | 96.7% | 21.7% |
| 3739180 | 59.1.1.5 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 | 0.58 | 46.0 | 3.52e-01 | 100.0% | 38.8% |
| 5078734 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 40.0 | 3.64e-01 | 90.0% | 58.0% |
| 4948882 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.53 | 38.0 | 2.39e-01 | 70.0% | 10.5% |
| 7698 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.51 | 38.0 | 2.63e-01 | 96.7% | 25.5% |