←Back to structures

KX365747.1__ANY29547.1__X__00036

Bact-Vir

KX365747.1__ANY29547.1__X__00036

Identity

Accession:
KX365747 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_PH1

TaxID: 1874540

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-57
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.69 55.0 4.86e-01 97.8% 60.0%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.68 57.0 4.70e-01 100.0% 56.8%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 54.0 5.38e-01 100.0% 100.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 3.84e-01 71.1% 43.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.67 55.0 4.46e-01 100.0% 47.4%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.66 53.0 5.12e-01 95.6% 82.4%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 50.0 4.88e-01 97.8% 78.0%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.64 45.0 4.83e-01 77.8% 94.4%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 44.0 4.21e-01 100.0% 61.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 46.0 3.97e-01 91.1% 47.4%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.59e-01 93.3% 81.2%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.61 52.0 3.71e-01 100.0% 55.9%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.59 47.0 3.23e-01 100.0% 37.4%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 47.0 3.41e-01 100.0% 50.3%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.76e-01 100.0% 52.6%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 46.0 3.95e-01 97.8% 79.7%
1o0sA02 1.20.1370.30 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.56 45.0 3.52e-01 97.8% 48.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 43.0 4.12e-01 100.0% 94.8%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 36.0 3.63e-01 100.0% 77.8%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.87e-01 100.0% 69.8%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.50 41.0 3.88e-01 95.6% 96.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487676 548.1.1.0 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.74 62.0 5.70e-01 95.6% 71.2%
5026668 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.73 52.0 3.24e-01 77.8% 26.3%
3493041 3796.1.1.2 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › GRIP 0.72 61.0 5.63e-01 95.6% 77.6%
3215887 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.69 55.0 4.77e-01 100.0% 56.0%
3212366 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.69 55.0 5.39e-01 95.6% 82.0%
143586 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.69 55.0 4.86e-01 97.8% 60.0%
3730259 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.68 54.0 4.96e-01 97.8% 69.2%
4327653 101.1.1.217 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.67 56.0 5.67e-01 100.0% 97.8%
5021144 101.1.1.545 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.67 54.0 5.10e-01 100.0% 74.5%
3737312 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.67 54.0 4.70e-01 97.8% 60.0%
3313889 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.05e-01 100.0% 82.0%
4983993 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 53.0 4.90e-01 95.6% 70.0%
4999433 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.66 54.0 5.29e-01 97.8% 86.0%
5003561 101.1.1.545 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.65 51.0 5.11e-01 100.0% 91.1%
3512840 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 52.0 5.08e-01 93.3% 90.0%
3234099 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.64 52.0 4.67e-01 100.0% 64.6%
3257722 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.64 52.0 4.32e-01 93.3% 56.5%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.72e-01 100.0% 64.3%
3954237 532.2.1.16 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.62 50.0 4.36e-01 100.0% 71.2%
4995688 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 5.02e-01 100.0% 87.3%
3666605 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.61 48.0 3.32e-01 93.3% 48.0%
5013347 101.1.2.946 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26555 0.60 49.0 4.91e-01 100.0% 97.8%
4928641 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 50.0 4.36e-01 100.0% 60.0%
4953416 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 48.0 4.65e-01 100.0% 94.5%
4034503 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.58 43.0 3.96e-01 100.0% 60.0%
4561525 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 43.0 3.94e-01 100.0% 73.3%
3516803 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.56 46.0 3.47e-01 100.0% 92.8%
3372218 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.55 44.0 3.95e-01 97.8% 72.9%
4640861 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.02e-01 100.0% 91.7%
3288006 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.53 43.0 2.75e-01 97.8% 81.2%
3733705 4048.1.1.1 ↗ alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.51 40.0 3.34e-01 95.6% 48.4%