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KX365748.1__ANY29602.1__X__00037
Bact-VirKX365748.1__ANY29602.1__X__00037
Identity
- Accession:
- KX365748 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-60
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j0eB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.31e-01 | 81.7% | 44.4% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.00e-01 | 81.7% | 81.5% |
| 4mfiA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 42.0 | 2.60e-01 | 90.0% | 77.4% |
| 2o8bB05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 2.93e-01 | 91.7% | 26.3% |
| 5bpdA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.53 | 43.0 | 3.42e-01 | 96.7% | 94.4% |
| 4gelB00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.53 | 44.0 | 3.16e-01 | 96.7% | 81.8% |
| 2j66A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.53 | 36.0 | 2.83e-01 | 71.7% | 81.3% |
| 5cgaE00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 41.0 | 2.78e-01 | 90.0% | 22.7% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.52 | 35.0 | 3.24e-01 | 70.0% | 77.8% |
| 4chgA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 36.0 | 2.92e-01 | 75.0% | 49.6% |
| 2znrA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 41.0 | 2.99e-01 | 90.0% | 36.0% |
| 2jscB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.47e-01 | 80.0% | 63.7% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 38.0 | 3.48e-01 | 90.0% | 60.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058295 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.61 | 41.0 | 3.82e-01 | 71.7% | 80.0% |
| 3249146 | 242.2.1.7 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › PF26577 | 0.60 | 42.0 | 3.70e-01 | 73.3% | 90.0% |
| 5065016 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.60 | 45.0 | 3.29e-01 | 85.0% | 93.9% |
| 5082507 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.58 | 42.0 | 3.06e-01 | 75.0% | 34.3% |
| 5057728 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 43.0 | 3.51e-01 | 83.3% | 53.6% |
| 4968598 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 42.0 | 2.95e-01 | 81.7% | 93.5% |
| 5028756 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.56 | 39.0 | 3.19e-01 | 86.7% | 36.8% |
| 3481782 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.55 | 48.0 | 4.15e-01 | 100.0% | 100.0% |
| 3498657 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.55 | 41.0 | 3.18e-01 | 93.3% | 33.3% |
| 5068529 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.55 | 39.0 | 3.23e-01 | 91.7% | 38.4% |
| 5001859 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.54 | 43.0 | 3.41e-01 | 98.3% | 89.0% |
| 3999672 | 109.4.1.257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 | 0.54 | 45.0 | 2.87e-01 | 100.0% | 34.1% |
| 4527737 | 7524.1.1.0 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like | 0.53 | 46.0 | 3.20e-01 | 100.0% | 52.4% |
| 4951107 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.53 | 42.0 | 3.21e-01 | 98.3% | 80.6% |
| 3803141 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 41.0 | 2.53e-01 | 93.3% | 54.3% |
| 4938924 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.53 | 36.0 | 3.26e-01 | 73.3% | 54.1% |
| 4023546 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 40.0 | 3.52e-01 | 88.3% | 80.0% |
| 4932970 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 39.0 | 3.35e-01 | 85.0% | 55.2% |
| 3525340 | 2006.1.4.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 | 0.51 | 39.0 | 3.04e-01 | 91.7% | 34.2% |
| 3311242 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.51 | 43.0 | 3.66e-01 | 96.7% | 84.8% |
| 5083910 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.51 | 35.0 | 2.83e-01 | 83.3% | 32.1% |
| 4014455 | 2007.1.1.32 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET | 0.51 | 43.0 | 3.08e-01 | 98.3% | 30.8% |
| 4002931 | 2006.1.4.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 | 0.51 | 40.0 | 3.31e-01 | 91.7% | 45.8% |
| 4992758 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.50 | 35.0 | 2.39e-01 | 75.0% | 79.1% |
| 4088038 | 2002.1.1.138 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiG | 0.50 | 40.0 | 2.72e-01 | 93.3% | 48.7% |
D2
medium
residues 61-122
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.72 | 54.0 | 4.32e-01 | 79.0% | 67.0% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.71 | 49.0 | 3.42e-01 | 80.6% | 22.4% |
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 50.0 | 3.15e-01 | 79.0% | 91.0% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.64 | 51.0 | 4.54e-01 | 93.5% | 60.7% |
| 2f9wA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 57.0 | 4.53e-01 | 98.4% | 77.1% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.61 | 43.0 | 4.31e-01 | 75.8% | 80.3% |
| 6oz7B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 3.28e-01 | 91.9% | 72.0% |
| 7e24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 50.0 | 3.31e-01 | 100.0% | 70.3% |
| 4pdyA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 42.0 | 2.97e-01 | 93.5% | 53.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3516215 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.81 | 62.0 | 3.99e-01 | 80.6% | 44.8% |
| 3808261 | 3826.1.1.27 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 | 0.76 | 58.0 | 5.23e-01 | 82.3% | 62.4% |
| 3806943 | 375.1.9.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › DUF3754 | 0.73 | 58.0 | 5.20e-01 | 85.5% | 62.4% |
| 3707613 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.67 | 50.0 | 3.35e-01 | 82.3% | 20.0% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.67 | 48.0 | 4.52e-01 | 75.8% | 64.0% |
| 3849718 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.65 | 49.0 | 3.07e-01 | 80.6% | 74.0% |
| 3592341 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.65 | 48.0 | 3.30e-01 | 85.5% | 21.3% |
| 3742235 | 109.4.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N | 0.63 | 49.0 | 2.74e-01 | 87.1% | 55.7% |
| 3968723 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 38.0 | 2.59e-01 | 75.8% | 42.7% |