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KX379666.1__AOQ29191.1__3R16S_037__00037

Bact-Vir

KX379666.1__AOQ29191.1__3R16S_037__00037

Identity

Accession:
KX379666 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skunavirus› Lactococcus_phage_3R16S

TaxID: 1874589

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-82_94-108
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fpoC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 51.0 3.71e-01 86.2% 61.3%
6aieA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 3.47e-01 83.1% 61.5%
1vdrA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.62 52.0 3.93e-01 93.8% 96.8%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.90e-01 95.4% 83.7%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 43.0 4.20e-01 81.5% 85.3%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 48.0 4.01e-01 98.5% 69.5%
3grzB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.35e-01 96.9% 33.2%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.55 42.0 2.99e-01 90.8% 63.2%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.46e-01 98.5% 45.2%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.17e-01 90.8% 51.0%
7chiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 2.73e-01 75.4% 74.5%
2esnA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 46.0 3.87e-01 96.9% 74.8%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 38.0 3.39e-01 78.5% 100.0%
3frhA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.17e-01 96.9% 35.0%
1jmxA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.77e-01 93.8% 70.9%
1b7yB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 37.0 2.63e-01 76.9% 89.5%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.65e-01 95.4% 65.4%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.24e-01 92.3% 56.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053154 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.69 59.0 4.50e-01 100.0% 80.6%
3380564 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 50.0 3.86e-01 86.2% 63.4%
4210295 2003.1.5.32 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.62 51.0 3.63e-01 92.3% 71.5%
4183099 7501.1.1.1 ↗ a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.60 51.0 3.74e-01 96.9% 91.7%
3454343 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 47.0 3.80e-01 87.7% 71.5%
4304358 7523.1.1.6 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Porphobil_deam 0.59 50.0 3.97e-01 96.9% 77.9%
5057520 7501.1.1.2 ↗ a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C 0.59 48.0 3.36e-01 92.3% 90.5%
3594306 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.56 47.0 4.28e-01 100.0% 92.6%
5071468 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.29e-01 78.5% 70.4%
4434724 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.55 47.0 3.98e-01 96.9% 70.0%
5026619 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.54 40.0 2.83e-01 80.0% 56.3%
4998374 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.28e-01 83.1% 97.6%
3971224 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 2.69e-01 100.0% 22.7%
5035531 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.52 41.0 3.14e-01 87.7% 88.7%
3704074 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.51 38.0 2.90e-01 83.1% 66.1%
3174361 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.50 36.0 2.59e-01 81.5% 36.6%
3823425 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 40.0 2.99e-01 96.9% 45.4%