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KX397365.1__ANZ48539.1__CAITLIN_244__00237

Bact-Vir

KX397365.1__ANZ48539.1__CAITLIN_244__00237

Identity

Accession:
KX397365 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.69 53.0 5.37e-01 82.0% 93.3%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 46.0 3.58e-01 75.4% 59.8%
4d8oA03 2.60.40.2660 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 4.16e-01 100.0% 69.8%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.59 51.0 4.53e-01 98.4% 88.9%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.59 50.0 4.49e-01 96.7% 98.9%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 40.0 3.19e-01 100.0% 34.9%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 40.0 3.06e-01 100.0% 29.7%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.70e-01 75.4% 58.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.56 41.0 3.68e-01 82.0% 95.8%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.56 40.0 3.35e-01 80.3% 92.7%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 40.0 3.08e-01 78.7% 63.9%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 34.0 3.03e-01 98.4% 37.8%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 36.0 3.22e-01 72.1% 64.5%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.40e-01 88.5% 61.8%
3t5oA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.50 36.0 3.71e-01 98.4% 82.8%
4jdzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 2.91e-01 75.4% 40.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237553 11.1.6.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.65 54.0 4.33e-01 100.0% 75.6%
4560889 11.1.6.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.65 56.0 4.50e-01 100.0% 74.4%
3622937 11.1.6.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.63 54.0 4.24e-01 100.0% 72.1%
3553310 12.5.1.18 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › UPA-FIIND 0.63 51.0 4.28e-01 100.0% 75.2%
4151818 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.61 53.0 4.66e-01 98.4% 96.7%
5041830 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 43.0 2.88e-01 78.7% 86.2%
3515328 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 42.0 3.57e-01 75.4% 93.0%
3915866 11.1.6.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.59 49.0 3.98e-01 100.0% 73.1%
3989300 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.57 47.0 4.07e-01 100.0% 80.9%
2097493 54.1.2.1 beta barrels › EV matrix protein › EV matrix protein › Non-strctural protein 1 › Pneumo_NS1 0.55 44.0 3.52e-01 91.8% 77.0%
5055500 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 37.0 3.55e-01 73.8% 68.0%
4980312 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 37.0 2.63e-01 80.3% 44.4%
4003701 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.51 36.0 3.23e-01 80.3% 88.0%
3802359 11.1.5.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.51 36.0 3.16e-01 77.0% 68.7%
3814061 5.1.3.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_FKB95 0.51 37.0 2.40e-01 80.3% 100.0%
3889537 11.2.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29592 0.50 36.0 2.96e-01 78.7% 99.2%
3957119 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 2.57e-01 75.4% 37.7%
D2 high residues 68-175
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.60 37.0 3.76e-01 75.0% 62.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 38.0 3.45e-01 74.1% 78.1%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.85e-01 75.0% 84.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 37.0 3.53e-01 98.1% 65.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492377 220.1.1.18 beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.54 38.0 3.52e-01 73.1% 91.7%
3742761 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.54 38.0 3.79e-01 73.1% 72.2%
3821077 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 2.74e-01 77.8% 52.0%
3789491 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.52 36.0 3.93e-01 83.3% 89.4%
3623481 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.51 37.0 3.16e-01 100.0% 44.4%
5054303 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.50 31.0 3.48e-01 82.4% 82.5%
D3 high residues 181-262
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8bB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.66 47.0 4.04e-01 75.6% 48.1%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.63 30.0 2.59e-01 76.8% 29.0%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 32.0 2.94e-01 95.1% 39.3%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 33.0 2.97e-01 98.8% 37.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 38.0 3.33e-01 100.0% 45.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 42.0 4.54e-01 87.8% 92.6%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 3.80e-01 72.0% 75.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.57 27.0 3.22e-01 93.9% 65.5%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 4.35e-01 91.5% 83.2%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.96e-01 85.4% 75.0%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 42.0 4.51e-01 92.7% 98.5%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 34.0 3.02e-01 98.8% 44.3%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 33.0 2.58e-01 84.1% 27.8%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 43.0 2.72e-01 89.0% 34.3%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 45.0 3.47e-01 98.8% 46.7%
1k7cA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 43.0 3.15e-01 91.5% 89.7%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.52 43.0 3.38e-01 95.1% 49.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 38.0 3.48e-01 84.1% 57.8%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 41.0 3.64e-01 84.1% 83.5%
6ifnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 42.0 3.34e-01 89.0% 54.4%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 36.0 3.85e-01 89.0% 82.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.68e-01 97.6% 63.9%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.90e-01 96.3% 75.8%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.18e-01 75.6% 64.0%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.52 45.0 3.82e-01 100.0% 61.9%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.46e-01 90.2% 79.9%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 46.0 3.63e-01 100.0% 82.3%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.03e-01 75.6% 60.8%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 3.51e-01 96.3% 53.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046813 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 36.0 3.21e-01 98.8% 38.3%
3511590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 37.0 3.42e-01 100.0% 44.8%
3737218 859.1.1.3 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 0.65 47.0 3.65e-01 75.6% 37.1%
4950433 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 33.0 2.94e-01 98.8% 35.4%
3599158 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 49.0 3.57e-01 86.6% 60.0%
5032395 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 40.0 3.45e-01 100.0% 44.0%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.56e-01 98.8% 50.9%
3931122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 34.0 3.24e-01 97.6% 50.5%
3289139 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.58 46.0 4.16e-01 87.8% 77.4%
4977899 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 36.0 3.25e-01 97.6% 46.4%
3602384 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.57 48.0 4.26e-01 93.9% 82.5%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.67e-01 92.7% 59.0%
3215570 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 32.0 2.86e-01 98.8% 38.3%
4961487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.69e-01 78.0% 76.5%
3485236 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 48.0 4.01e-01 96.3% 79.3%
3783520 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 45.0 4.71e-01 91.5% 97.3%
5045441 192.2.1.88 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N 0.54 40.0 3.10e-01 76.8% 87.1%
4001843 304.4.1.51 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › RVT_1 0.53 37.0 3.21e-01 73.2% 46.9%
5074130 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.53 41.0 2.94e-01 85.4% 30.2%
4961841 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 42.0 3.67e-01 89.0% 86.9%
3711985 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.52 46.0 3.31e-01 100.0% 46.8%
3599724 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.52 46.0 3.79e-01 96.3% 76.6%
3990129 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.52 36.0 2.70e-01 72.0% 32.9%
3905174 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 48.0 4.31e-01 100.0% 88.2%
4977598 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 38.0 3.48e-01 84.1% 57.3%
4984370 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.52 44.0 3.21e-01 100.0% 45.8%
3634662 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.51 42.0 4.15e-01 92.7% 94.4%
5062471 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 40.0 3.58e-01 84.1% 60.9%
3924000 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 38.0 4.13e-01 82.9% 92.9%
5031564 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.51 40.0 3.89e-01 86.6% 81.7%
3228583 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 39.0 3.52e-01 84.1% 60.9%