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KX397372.1__ANZ50278.1__PHOBOS_88__00088

Bact-Vir

KX397372.1__ANZ50278.1__PHOBOS_88__00088

Identity

Accession:
KX397372 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_vB_EamM_Phobos

TaxID: 1883377

Cluster

View cluster (5 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-67
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 51.0 4.84e-01 89.5% 64.2%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 47.0 3.69e-01 98.2% 36.1%
6bg2A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.59e-01 75.4% 33.6%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 50.0 3.78e-01 87.7% 71.1%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 3.09e-01 75.4% 40.6%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 3.86e-01 100.0% 85.7%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 52.0 3.88e-01 93.0% 72.8%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.56e-01 100.0% 67.0%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 43.0 3.84e-01 100.0% 51.2%
1cwvA04 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 49.0 4.28e-01 91.2% 94.5%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.40e-01 89.5% 66.2%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.60 51.0 3.98e-01 100.0% 65.4%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 49.0 3.27e-01 100.0% 47.3%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.29e-01 100.0% 75.8%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.97e-01 89.5% 55.3%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.51e-01 73.7% 51.2%
4e11A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 2.86e-01 89.5% 25.7%
3le2A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 42.0 3.25e-01 82.5% 41.2%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.94e-01 94.7% 79.2%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.33e-01 73.7% 50.7%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.64e-01 100.0% 44.7%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.47e-01 91.2% 79.2%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 37.0 2.71e-01 75.4% 42.8%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.90e-01 94.7% 84.5%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 44.0 3.18e-01 93.0% 34.1%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.58e-01 86.0% 64.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.12e-01 94.7% 76.8%
2m1cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.07e-01 78.9% 85.8%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.94e-01 100.0% 69.0%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.52 39.0 2.62e-01 80.7% 40.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 44.0 2.81e-01 100.0% 20.9%
5jd5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.53e-01 87.7% 25.9%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.51 41.0 2.64e-01 100.0% 34.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229399 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.74 49.0 3.01e-01 100.0% 11.6%
4272501 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 63.0 5.20e-01 100.0% 58.1%
3885317 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.72 48.0 3.04e-01 71.9% 13.6%
5082744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 48.0 4.12e-01 78.9% 44.4%
3902438 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 54.0 4.56e-01 93.0% 49.5%
3906579 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.68 44.0 3.44e-01 98.2% 31.2%
3652009 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 4.36e-01 94.7% 73.1%
3948839 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.67 60.0 3.69e-01 100.0% 40.9%
3619246 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 55.0 4.42e-01 89.5% 58.1%
3741704 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.66 57.0 4.45e-01 100.0% 85.4%
3785293 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.66 46.0 3.77e-01 100.0% 39.1%
4298303 243.1.1.92 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 0.66 56.0 4.45e-01 100.0% 86.4%
4226076 63.1.1.1 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.65 44.0 2.56e-01 70.2% 31.3%
3732875 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.65 47.0 3.63e-01 80.7% 33.6%
3735201 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.65 47.0 3.58e-01 80.7% 31.2%
3490300 243.4.1.6 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › Radial_spoke 0.65 46.0 3.17e-01 87.7% 21.7%
4043778 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.65 57.0 3.31e-01 100.0% 43.4%
3205897 2003.1.5.71 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.64 56.0 3.49e-01 100.0% 21.5%
4034016 243.10.1.1 ↗ a+b two layers › Cystatin-like › Lin0334 protein › Lin0334 protein › DUF1433 0.64 55.0 4.45e-01 100.0% 50.4%
4940667 881.3.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 0.64 53.0 3.33e-01 91.2% 26.9%
3588252 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.63 45.0 4.40e-01 77.2% 78.5%
4019913 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 44.0 3.64e-01 100.0% 39.8%
3487242 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.12e-01 77.2% 63.5%
3896065 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.63 54.0 3.42e-01 100.0% 18.4%
3783070 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.62 55.0 3.36e-01 100.0% 39.2%
3718566 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.62 50.0 3.06e-01 89.5% 49.3%
3614758 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.61 45.0 2.75e-01 80.7% 13.9%
3779701 912.1.1.8 ↗ few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › CIMR 0.61 51.0 3.08e-01 100.0% 20.4%
3980078 274.1.1.24 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC 0.61 42.0 3.96e-01 71.9% 82.9%
3593376 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 49.0 4.16e-01 89.5% 56.8%
3254541 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 4.17e-01 96.5% 74.5%
3964076 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.60 44.0 3.64e-01 100.0% 40.9%
2088429 1148.1.1.0 ↗ a+b two layers › Cell wall binding protein cwp8 domain 2 › Cell wall binding protein cwp8 domain 2 › Cell wall binding protein cwp8 domain 2 0.60 46.0 3.91e-01 100.0% 50.5%
3591269 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 49.0 3.15e-01 98.2% 19.7%
3264903 3195.1.1.1 ↗ extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 0.60 50.0 3.90e-01 100.0% 53.6%
3258217 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.59 44.0 4.21e-01 82.5% 98.6%
3187473 7579.1.1.101 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE 0.59 48.0 2.95e-01 87.7% 24.2%
2400350 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 39.0 2.48e-01 75.4% 11.6%
3803793 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.58 49.0 3.19e-01 100.0% 22.0%
3435691 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 44.0 4.27e-01 89.5% 73.8%
5018537 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 44.0 3.66e-01 98.2% 47.0%
3396063 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 41.0 2.61e-01 82.5% 13.5%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.90e-01 98.2% 58.7%
5011673 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 45.0 3.61e-01 89.5% 43.5%
3879945 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 4.02e-01 100.0% 73.3%
3987842 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 42.0 2.89e-01 84.2% 42.1%
4606701 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.56 44.0 2.78e-01 89.5% 58.1%
3489196 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 45.0 3.17e-01 100.0% 41.3%
3471731 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 42.0 2.72e-01 86.0% 69.5%
4027680 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 48.0 3.61e-01 100.0% 50.3%
3591097 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 3.02e-01 100.0% 29.4%
3255196 4970.1.1.28 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › SPC25 0.55 47.0 3.95e-01 100.0% 72.8%
3710275 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 38.0 2.53e-01 98.2% 17.9%
3712208 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.53 45.0 2.95e-01 100.0% 32.3%
3780198 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 37.0 2.13e-01 77.2% 10.5%
None — 0.53 37.0 2.27e-01 77.2% 18.6%
3205722 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 45.0 3.03e-01 100.0% 37.8%
3710314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.15e-01 89.5% 93.8%
5724 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 40.0 3.79e-01 98.2% 72.1%
3299594 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.52 43.0 3.18e-01 100.0% 38.3%
4127133 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.51 42.0 3.25e-01 98.2% 65.7%
5009887 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 40.0 3.35e-01 100.0% 96.8%
3561487 223.1.1.108 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.50 39.0 2.32e-01 87.7% 39.8%
D2 high residues 72-161
PDB
Domain cluster: rep: NC_048016.1__YP_009806595.1__HOT70_gp190__00103__D72-160