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KX397373.1__ANZ50652.1__STRATTON_227__00215

Bact-Vir

KX397373.1__ANZ50652.1__STRATTON_227__00215

Identity

Accession:
KX397373 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-157
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16473.12 best Rv2179c-like 40.7 3.10e-10 98.6% 66.7%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 63.0 6.40e-01 100.0% 81.2%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 72.0 6.25e-01 100.0% 64.7%
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 66.0 6.10e-01 100.0% 68.6%
1j9aA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 67.0 6.06e-01 100.0% 67.9%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 67.0 5.92e-01 100.0% 65.6%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 61.0 5.78e-01 100.0% 73.1%
5dk5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 66.0 5.80e-01 100.0% 65.3%
2xriA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 68.0 5.88e-01 100.0% 92.2%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 67.0 5.65e-01 100.0% 85.1%
7wrnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 67.0 5.87e-01 100.0% 100.0%
1wljA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 51.0 4.74e-01 100.0% 61.3%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.66 36.0 4.75e-01 98.6% 100.0%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 41.0 4.18e-01 100.0% 65.2%
2gv9A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 56.0 4.71e-01 100.0% 68.3%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 43.0 3.56e-01 100.0% 43.3%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 4.23e-01 100.0% 69.5%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 4.66e-01 98.6% 100.0%
3bleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 39.0 3.10e-01 75.5% 99.3%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 40.0 3.45e-01 100.0% 50.2%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 48.0 4.37e-01 100.0% 85.3%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 47.0 4.24e-01 100.0% 72.0%
1bxgA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.50 33.0 3.36e-01 98.6% 66.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945113 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 67.0 6.08e-01 100.0% 64.4%
3969855 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.81 70.0 6.33e-01 100.0% 70.0%
4044396 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.80 72.0 6.17e-01 100.0% 63.4%
4381276 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 71.0 5.93e-01 100.0% 58.5%
3740318 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 68.0 6.12e-01 100.0% 68.1%
4102293 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 62.0 5.52e-01 100.0% 60.0%
3822649 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.78 64.0 5.52e-01 100.0% 57.4%
3473937 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.74 68.0 5.85e-01 100.0% 64.8%
3733253 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.74 70.0 5.58e-01 100.0% 90.4%
3962916 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 60.0 5.84e-01 100.0% 78.4%
3481587 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 68.0 5.63e-01 100.0% 97.0%
3600799 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 69.0 5.77e-01 100.0% 93.2%
3923319 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 69.0 5.63e-01 100.0% 84.7%
3711482 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 68.0 5.69e-01 100.0% 88.9%
3993235 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 68.0 5.77e-01 100.0% 91.6%
3489491 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 68.0 5.51e-01 100.0% 80.4%
3549895 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 67.0 5.64e-01 100.0% 85.3%
4227733 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 67.0 5.58e-01 100.0% 88.7%
3738098 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 67.0 5.61e-01 100.0% 93.8%
4505558 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 67.0 5.79e-01 100.0% 96.6%
3378450 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 67.0 5.55e-01 100.0% 81.7%
3528742 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 66.0 5.65e-01 100.0% 92.1%
3555211 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 66.0 5.74e-01 100.0% 96.6%
3229086 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 66.0 4.99e-01 100.0% 62.9%
3520911 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 65.0 6.37e-01 100.0% 91.3%
3506947 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 66.0 5.70e-01 100.0% 96.6%
4290521 2484.1.1.91 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.70 66.0 5.21e-01 100.0% 90.9%
3624820 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.69 64.0 4.83e-01 100.0% 44.2%
3234917 2484.1.1.45 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.68 63.0 4.68e-01 100.0% 87.5%
4209651 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.67 38.0 4.18e-01 100.0% 67.0%
3988496 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.67 63.0 5.34e-01 100.0% 85.1%
3392123 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 61.0 5.22e-01 100.0% 94.3%
4634740 2484.1.1.136 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.62 39.0 4.31e-01 100.0% 79.1%
5043731 2484.1.1.122 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF2209 0.60 41.0 4.25e-01 100.0% 73.8%
4293297 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 50.0 5.08e-01 100.0% 90.4%
3958207 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 4.54e-01 100.0% 78.6%
4600109 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.58 43.0 4.34e-01 100.0% 76.4%
3837099 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.57 42.0 3.40e-01 100.0% 41.2%
4929050 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.57 41.0 4.13e-01 100.0% 73.6%
4951115 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 52.0 4.20e-01 100.0% 54.5%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.55 30.0 3.38e-01 77.0% 67.6%
4943448 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 37.0 3.95e-01 100.0% 79.2%
4934684 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 35.0 3.73e-01 100.0% 75.0%
4219785 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.53 43.0 4.62e-01 99.3% 97.5%
3176331 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 4.10e-01 100.0% 73.3%
3921128 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.48e-01 100.0% 53.2%
4946348 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.52 37.0 2.93e-01 100.0% 34.6%
5051860 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 25.0 3.10e-01 79.9% 72.2%
3940192 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 26.0 3.31e-01 81.3% 79.5%
4976581 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 2.83e-01 100.0% 27.7%
5018721 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.51 40.0 4.01e-01 100.0% 80.0%
3251163 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 25.0 3.04e-01 79.9% 73.3%
D2 medium residues 158-245
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 3.65e-01 72.7% 55.2%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.57 45.0 4.60e-01 88.6% 88.5%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 4.07e-01 88.6% 90.2%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.57 41.0 4.22e-01 75.0% 81.7%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 39.0 4.13e-01 73.9% 93.4%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.54 42.0 3.50e-01 85.2% 72.8%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 39.0 3.99e-01 77.3% 94.1%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.51 40.0 3.66e-01 85.2% 75.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4089356 2486.1.1.22 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › SDH_protease, NfeD1b_N 0.61 43.0 3.14e-01 72.7% 29.2%
3354672 103.1.1.34 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.59 46.0 4.19e-01 86.4% 100.0%
4153047 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.58 50.0 4.21e-01 96.6% 84.7%
3832363 101.1.11.194 alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF247 0.57 52.0 4.27e-01 100.0% 89.0%
3530312 2485.1.1.120 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus 0.55 44.0 3.93e-01 88.6% 91.5%
2325673 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.54 42.0 3.81e-01 84.1% 74.6%
3731064 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.54 37.0 3.43e-01 70.5% 90.0%
4975476 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 42.0 3.60e-01 90.9% 60.0%
5079786 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.51 34.0 3.34e-01 87.5% 61.0%