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KX455876.1__ANZ52221.1__Ahp2_39__00039

Bact-Vir

KX455876.1__ANZ52221.1__Ahp2_39__00039

Identity

Accession:
KX455876 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-61
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 5.28e-01 85.4% 58.5%
3sylA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 58.0 3.80e-01 83.3% 20.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 4.89e-01 87.5% 52.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.94e-01 81.2% 70.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 51.0 4.02e-01 77.1% 39.8%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.72 59.0 4.13e-01 91.7% 99.3%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 47.0 4.27e-01 75.0% 50.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.37e-01 77.1% 55.6%
3eetA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.24e-01 72.9% 56.9%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.67 50.0 3.92e-01 83.3% 49.5%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.67 50.0 4.15e-01 83.3% 47.8%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.33e-01 87.5% 80.0%
4h0eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.04e-01 77.1% 52.9%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.68e-01 70.8% 40.0%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 45.0 3.28e-01 77.1% 25.7%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.13e-01 83.3% 67.1%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.29e-01 81.2% 66.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.07e-01 83.3% 77.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.21e-01 89.6% 72.4%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.00e-01 75.0% 54.5%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.97e-01 72.9% 57.4%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.99e-01 85.4% 66.3%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.00e-01 79.2% 81.0%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.90e-01 85.4% 66.7%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.94e-01 79.2% 75.4%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.73e-01 83.3% 58.8%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.87e-01 89.6% 69.0%
1sfuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.95e-01 83.3% 72.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.89e-01 87.5% 61.9%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.97e-01 75.0% 66.7%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.87e-01 85.4% 67.5%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.74e-01 81.2% 68.5%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.57 42.0 3.10e-01 81.2% 28.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.90e-01 81.2% 77.6%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 42.0 3.08e-01 87.5% 73.5%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.78e-01 81.2% 66.7%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 38.0 3.56e-01 81.2% 70.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480610 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.87 63.0 5.50e-01 77.1% 64.3%
3943462 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 60.0 5.76e-01 81.2% 65.5%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.81 63.0 5.05e-01 83.3% 53.3%
4940480 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 59.0 5.65e-01 85.4% 69.1%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.77 60.0 4.28e-01 87.5% 29.7%
5073990 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.76 61.0 5.24e-01 87.5% 58.7%
4944726 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 5.61e-01 87.5% 70.0%
4028884 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.74 54.0 4.02e-01 77.1% 33.0%
4954539 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 4.98e-01 70.8% 68.0%
5032049 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 47.0 4.43e-01 75.0% 55.0%
4449440 2004.1.1.422 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase 0.71 52.0 3.18e-01 77.1% 86.4%
5005544 101.1.2.205 alpha arrays › HTH › HTH › winged helix domain › PF0610-like_N 0.71 53.0 4.75e-01 83.3% 57.1%
5031872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 47.0 4.39e-01 77.1% 55.0%
3198039 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 52.0 4.37e-01 91.7% 45.7%
4031771 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.68 45.0 4.17e-01 70.8% 60.0%
4975730 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 4.60e-01 87.5% 62.9%
3938698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 4.52e-01 81.2% 73.8%
4942968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 4.07e-01 70.8% 52.2%
4940274 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 49.0 3.72e-01 79.2% 35.5%
4033688 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.65 49.0 4.41e-01 85.4% 78.6%
5048146 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 4.43e-01 72.9% 68.0%
4967948 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.26e-01 81.2% 56.9%
5014461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 43.0 4.42e-01 70.8% 75.6%
3943470 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.63 44.0 3.76e-01 75.0% 57.6%
3286628 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.63 46.0 4.07e-01 81.2% 66.7%
3509042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 3.87e-01 93.8% 60.0%
4941224 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 3.61e-01 70.8% 41.2%
4010286 101.1.2.300 alpha arrays › HTH › HTH › winged helix domain › HTH_41 0.61 45.0 3.79e-01 81.2% 63.5%
3976327 101.1.9.41 alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.61 41.0 4.23e-01 70.8% 77.8%
4008301 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.61 45.0 3.77e-01 83.3% 61.1%
5004272 101.1.9.41 alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.60 41.0 3.94e-01 70.8% 63.6%
4982117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.68e-01 72.9% 58.7%
5074054 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.60 42.0 4.10e-01 77.1% 69.1%
4969697 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.59 41.0 4.18e-01 77.1% 82.2%
3965440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.00e-01 77.1% 70.9%
3971896 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.45e-01 77.1% 67.5%
1175649 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.53 36.0 3.21e-01 75.0% 55.6%
3586991 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.53 37.0 3.32e-01 79.2% 52.0%
D2 medium residues 102-155
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.81 66.0 4.60e-01 88.9% 60.1%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.79 61.0 6.23e-01 85.2% 92.3%
1yzbA02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.72 56.0 5.91e-01 88.9% 100.0%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 63.0 4.25e-01 98.1% 40.6%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 60.0 4.26e-01 100.0% 30.6%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.70 64.0 4.07e-01 100.0% 29.8%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.70 52.0 4.96e-01 90.7% 67.7%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.69 56.0 4.95e-01 94.4% 88.2%
1nvpB00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 50.0 5.41e-01 85.2% 100.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.69 47.0 5.07e-01 72.2% 83.0%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.68 55.0 5.20e-01 92.6% 93.9%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.66 53.0 4.60e-01 88.9% 88.2%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 46.0 4.13e-01 77.8% 58.1%
3m9vA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 46.0 3.51e-01 81.5% 70.9%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 48.0 4.26e-01 100.0% 61.7%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.03e-01 72.2% 72.2%
1lqsL01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 43.0 3.67e-01 87.0% 54.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.42e-01 70.4% 94.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211845 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.87 59.0 6.67e-01 70.4% 100.0%
3631184 3151.1.1.0 alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.75 52.0 5.56e-01 75.9% 86.7%
3360727 1054.1.1.2 alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › DUF7746 0.75 50.0 5.39e-01 70.4% 86.7%
3293917 616.1.1.28 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › RNA_pol_Rpb1_1 0.75 56.0 4.23e-01 79.6% 35.8%
3973390 632.18.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › DUF4398 0.69 49.0 4.45e-01 74.1% 57.1%
4318142 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.67 58.0 4.33e-01 98.1% 45.0%
3867542 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.66 55.0 4.69e-01 90.7% 96.5%
1954342 3826.1.1.1 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal 0.65 52.0 4.46e-01 90.7% 89.9%
3592841 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 44.0 4.04e-01 72.2% 57.1%