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KX507046.1__AOQ26833.1__X__00108

Bact-Vir

KX507046.1__AOQ26833.1__X__00108

Identity

Accession:
KX507046 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_S4-7

TaxID: 1873905

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: rep: JN882285.1__AFC21976.1__GAP32_516__00529__D3-46
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.82 68.0 6.53e-01 89.6% 79.6%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.71 44.0 5.02e-01 77.1% 91.2%
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 50.0 5.47e-01 81.2% 100.0%
7rh9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 2.88e-01 89.6% 78.8%
3nowA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 45.0 2.60e-01 100.0% 15.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.86 66.0 6.49e-01 83.3% 80.8%
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 62.0 6.65e-01 81.2% 95.0%
4015300 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 73.0 5.83e-01 97.9% 56.5%
3358136 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.78 64.0 5.26e-01 95.8% 52.5%
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 62.0 5.12e-01 97.9% 50.6%
3539687 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 68.0 5.50e-01 97.9% 84.7%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.71 61.0 4.96e-01 97.9% 90.0%
4488005 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.69 62.0 4.89e-01 100.0% 50.5%
3174995 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 57.0 4.40e-01 97.9% 88.2%
3877617 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.66 53.0 4.43e-01 91.7% 50.6%
3301384 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 50.0 4.81e-01 81.2% 70.9%
2755236 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.66 38.0 2.56e-01 85.4% 14.1%
5082761 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 45.0 3.32e-01 72.9% 71.5%
5053880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 49.0 5.07e-01 81.2% 91.1%
3577651 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.65 55.0 4.99e-01 95.8% 81.5%
3818617 376.1.1.103 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 0.64 48.0 4.64e-01 93.8% 72.7%
3218128 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 41.0 4.49e-01 89.6% 82.5%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.61 46.0 4.91e-01 87.5% 97.5%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.58 40.0 3.94e-01 97.9% 65.5%
3205074 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 3.99e-01 72.9% 70.0%
5060491 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 43.0 3.25e-01 91.7% 33.3%
4964080 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 47.0 3.05e-01 93.8% 66.0%
3275475 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 47.0 2.99e-01 93.8% 73.0%
4562058 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.54 40.0 4.19e-01 85.4% 86.7%
3787064 7534.1.1.0 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase 0.54 44.0 2.66e-01 89.6% 14.4%
3907975 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.52 39.0 4.02e-01 87.5% 88.9%
4281576 7101.1.1.1 ↗ extended segments › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Slu7 0.51 44.0 3.36e-01 97.9% 47.8%
3182259 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.50 38.0 2.84e-01 100.0% 27.4%
D2 high residues 57-100
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44