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KX507046.1__AOQ26854.1__X__00129

Bact-Vir

KX507046.1__AOQ26854.1__X__00129

Identity

Accession:
KX507046 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_S4-7

TaxID: 1873905

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: rep: MG592562.1__AUR94284.1__NVP1193O_153__00153__D3-58
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.85 74.0 7.16e-01 100.0% 87.7%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 72.0 6.16e-01 100.0% 59.6%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 73.0 6.71e-01 100.0% 75.0%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 71.0 6.67e-01 100.0% 77.5%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 67.0 5.77e-01 100.0% 61.1%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 67.0 5.97e-01 100.0% 67.1%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 61.0 6.03e-01 94.9% 81.0%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 67.0 6.25e-01 96.6% 86.3%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 63.0 6.00e-01 100.0% 78.6%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 60.0 5.08e-01 96.6% 52.4%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 60.0 5.79e-01 100.0% 77.9%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 60.0 5.48e-01 96.6% 66.7%
2d5vA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 64.0 5.85e-01 100.0% 87.3%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.73 48.0 4.92e-01 72.9% 71.4%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 61.0 5.96e-01 100.0% 87.7%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 58.0 5.61e-01 100.0% 79.1%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.54e-01 100.0% 70.9%
2l1pA00 1.10.260.70 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › SATB, CULT domain 0.69 60.0 5.42e-01 100.0% 71.1%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 57.0 5.31e-01 100.0% 75.0%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 58.0 5.53e-01 100.0% 87.3%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 39.0 3.26e-01 71.2% 42.9%
2pejA00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.58 47.0 3.84e-01 100.0% 48.6%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 36.0 3.67e-01 76.3% 64.4%
2fx0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 41.0 3.25e-01 78.0% 75.0%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.57 39.0 3.51e-01 100.0% 47.8%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.56 37.0 3.27e-01 84.7% 47.1%
2hxiB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.28e-01 81.4% 89.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 38.0 3.70e-01 81.4% 63.2%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 38.0 3.28e-01 71.2% 50.0%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 40.0 3.07e-01 78.0% 73.1%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 38.0 2.73e-01 72.9% 28.9%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 40.0 3.07e-01 78.0% 71.4%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 44.0 3.55e-01 100.0% 77.6%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.52 42.0 3.95e-01 89.8% 82.4%
2mn4A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 37.0 3.27e-01 100.0% 48.9%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.51 37.0 3.25e-01 86.4% 70.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.50 36.0 3.12e-01 79.7% 85.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977908 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.88 77.0 6.53e-01 100.0% 60.0%
4963279 101.1.4.92 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5791 0.74 62.0 5.98e-01 100.0% 84.1%
3590127 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 64.0 5.60e-01 100.0% 65.9%
3537934 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.74 64.0 5.97e-01 100.0% 92.0%
4177900 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 63.0 6.27e-01 100.0% 95.0%
3868638 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.73 63.0 5.79e-01 100.0% 83.7%
1563574 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 61.0 5.96e-01 100.0% 87.7%
3587619 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 61.0 5.83e-01 100.0% 81.4%
3931700 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.72 63.0 5.51e-01 100.0% 70.0%
3306298 101.1.4.53 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF29035 0.71 62.0 6.17e-01 100.0% 96.7%
3596443 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.69 48.0 4.45e-01 72.9% 70.7%
160875 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.69 58.0 5.53e-01 100.0% 87.3%
3279231 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.63 46.0 3.53e-01 78.0% 88.9%
3485337 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.59 50.0 4.31e-01 100.0% 72.0%
3325610 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 39.0 3.16e-01 79.7% 37.3%
5025363 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.57 38.0 2.90e-01 81.4% 30.8%
3659300 3861.1.1.1 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR 0.55 48.0 3.59e-01 100.0% 47.1%
3964625 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 38.0 2.82e-01 72.9% 30.7%
3586873 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 49.0 4.05e-01 100.0% 65.0%
5004570 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 38.0 3.54e-01 76.3% 84.0%
4975372 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.53 42.0 3.59e-01 100.0% 80.0%
3782374 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.51 42.0 3.53e-01 100.0% 68.7%