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KX507046.1__AOQ26880.1__X__00155

Bact-Vir

KX507046.1__AOQ26880.1__X__00155

Identity

Accession:
KX507046 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_S4-7

TaxID: 1873905

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 671-766
PDB
D2 medium residues 1-57
PDB
Domain cluster: rep: MK719731.1__QCQ62102.1__Barba20A_gp119__00119__D11-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26208.1 best Phage_phiTE_241_N 58.6 8.60e-16 84.2% 44.9%
D3 medium residues 216-389
PDB
Domain cluster: rep: FQ482085.1__CBX44539.1__P88_00280__00028__D197-337
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 69.0 5.19e-01 100.0% 40.9%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 64.0 4.55e-01 100.0% 30.6%
4c2lA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 61.0 4.63e-01 100.0% 39.0%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 41.0 4.27e-01 100.0% 58.9%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 65.0 4.98e-01 100.0% 47.2%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.67 39.0 4.98e-01 99.4% 100.0%
3grhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 58.0 4.36e-01 100.0% 46.3%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 40.0 4.17e-01 98.3% 71.3%
3ljyA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 40.0 3.59e-01 100.0% 48.1%
1igrA03 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.60 46.0 4.63e-01 100.0% 79.7%
1qjvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 57.0 4.44e-01 100.0% 50.9%
1hg8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 54.0 4.25e-01 100.0% 59.3%
5gkdA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 53.0 4.50e-01 100.0% 65.3%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.55 51.0 3.66e-01 100.0% 52.0%
5c1cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 47.0 3.91e-01 98.3% 64.9%
4kxfP04 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.51 44.0 3.42e-01 100.0% 40.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034538 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.82 52.0 3.51e-01 100.0% 19.6%
4527582 207.2.1.76 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.81 69.0 5.18e-01 100.0% 39.7%
4980606 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.81 52.0 5.28e-01 100.0% 65.9%
5034080 207.2.2.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin 0.79 48.0 6.00e-01 95.4% 95.5%
4012052 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 62.0 4.85e-01 100.0% 43.7%
3312237 207.2.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.74 56.0 4.70e-01 100.0% 49.1%
4626930 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.72 64.0 4.99e-01 100.0% 46.3%
2433695 207.2.1.14 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 64.0 4.87e-01 100.0% 55.6%
5082766 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.67 64.0 5.01e-01 100.0% 55.2%
4856486 207.9.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.64 36.0 4.39e-01 94.3% 85.6%
3252135 207.2.1.70 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.62 51.0 3.69e-01 100.0% 32.3%
3287619 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.58 47.0 3.56e-01 99.4% 35.3%
3716648 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.56 39.0 2.85e-01 100.0% 27.3%
3359787 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.55 48.0 3.28e-01 99.4% 26.0%
4028833 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 45.0 2.96e-01 100.0% 21.7%
3245719 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.51 48.0 3.53e-01 100.0% 47.8%
D4 medium residues 390-569
PDB