←Back to structures

KX555527.1__AOQ27539.1__X__00022

Bact-Vir

KX555527.1__AOQ27539.1__X__00022

Identity

Accession:
KX555527 ↗
Kingdom:
phage

Quality

61.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Limdunavirus› Leuconostoc_phage_LDG

TaxID: 1897539

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-136
PDB
Domain cluster: rep: IMGVR_UViG_3300003604_000018-3300003604-JGI26464J51801_10016209__D29-123
D2 high residues 149-200
PDB
Domain cluster: rep: NC_024390.1__YP_009044975.1__HL59_gp21__00021__D144-201
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.85 62.0 4.96e-01 100.0% 42.1%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 55.0 5.77e-01 100.0% 75.0%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 57.0 5.00e-01 100.0% 50.7%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 58.0 5.05e-01 100.0% 60.5%
6rawN02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.61 41.0 4.08e-01 71.2% 98.2%
1i1qB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 48.0 3.36e-01 96.2% 37.6%
3ls9A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.56 43.0 3.39e-01 84.6% 58.9%
2k6pA00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.54 47.0 4.07e-01 100.0% 95.2%
2zuoA06 2.30.30.560 Mainly Beta › Roll › SH3 type barrels. › Major vault protein, N-terminal structural repeat domain 0.53 37.0 3.75e-01 80.8% 76.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.78e-01 100.0% 64.4%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 2.85e-01 96.2% 33.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.85 62.0 6.61e-01 100.0% 87.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.78 55.0 5.66e-01 100.0% 78.0%
1396451 207.2.1.60 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta-sol_PIC_HAP1_IgA0_2nd 0.71 58.0 3.16e-01 100.0% 5.9%
3386157 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.62 40.0 3.97e-01 90.4% 61.8%
4578799 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.56 41.0 3.93e-01 92.3% 68.3%
1045 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.56 38.0 3.70e-01 96.2% 61.3%
5062575 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 39.0 3.82e-01 94.2% 70.0%
4204828 1.1.9.30 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 0.51 45.0 4.07e-01 100.0% 94.3%
D3 high residues 205-294
PDB