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KX557278.1__AOE44395.1__SEA_GHOBES_44__00044

Bact-Vir

KX557278.1__AOE44395.1__SEA_GHOBES_44__00044

Identity

Accession:
KX557278 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ghobesvirus› Gordonia_phage_Ghobes

TaxID: 1887647

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.57 38.0 3.76e-01 70.2% 67.7%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.40e-01 100.0% 47.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391334 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 53.0 6.12e-01 71.9% 100.0%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 46.0 5.19e-01 70.2% 100.0%
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 47.0 4.56e-01 75.4% 78.5%
4965516 377.1.1.132 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7561 0.66 45.0 4.30e-01 70.2% 90.8%
3472238 376.1.5.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.61 36.0 4.15e-01 82.5% 85.0%
3733166 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 41.0 4.17e-01 86.0% 80.0%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 38.0 3.67e-01 70.2% 100.0%
None — 0.56 42.0 3.49e-01 84.2% 51.8%
4857080 376.1.3.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H 0.56 42.0 3.44e-01 84.2% 55.4%
5017616 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.55 40.0 3.44e-01 87.7% 47.4%
3731209 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 37.0 3.23e-01 78.9% 42.0%
3908093 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.52 37.0 3.93e-01 96.5% 100.0%
3933029 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.52 30.0 3.13e-01 77.2% 58.0%
3810129 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.51 38.0 3.70e-01 82.5% 72.3%
3478683 376.1.1.123 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › NOA36 0.51 39.0 3.74e-01 91.2% 72.3%
5061097 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 36.0 3.30e-01 100.0% 54.1%