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KX557281.1__AOE44556.1__SEA_JUMBO_46__00046

Bact-Vir

KX557281.1__AOE44556.1__SEA_JUMBO_46__00046

Identity

Accession:
KX557281 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.78 55.0 3.99e-01 73.6% 39.6%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.78 58.0 3.33e-01 79.2% 12.1%
1ndbA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.73 62.0 3.96e-01 98.1% 24.3%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.73 63.0 4.68e-01 98.1% 91.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.73 53.0 4.17e-01 79.2% 37.6%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.70 55.0 4.37e-01 86.8% 83.2%
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.68 49.0 3.77e-01 77.4% 58.9%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 50.0 3.54e-01 79.2% 46.6%
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 60.0 4.05e-01 100.0% 49.5%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.67 52.0 3.43e-01 100.0% 19.5%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 53.0 3.59e-01 86.8% 84.0%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.66 60.0 3.75e-01 100.0% 46.2%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 51.0 3.41e-01 84.9% 22.6%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.65 47.0 5.05e-01 98.1% 91.1%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 51.0 3.37e-01 90.6% 21.6%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 52.0 4.00e-01 94.3% 97.0%
5ip4E00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.64 46.0 4.02e-01 88.7% 50.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 46.0 3.91e-01 92.5% 44.7%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 38.0 3.25e-01 81.1% 37.6%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 53.0 3.82e-01 100.0% 76.6%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.62 44.0 3.92e-01 88.7% 51.9%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 54.0 3.51e-01 98.1% 56.6%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 46.0 3.41e-01 88.7% 28.7%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 54.0 4.61e-01 100.0% 67.4%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 49.0 3.61e-01 100.0% 31.8%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 43.0 3.66e-01 88.7% 43.8%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 52.0 4.18e-01 100.0% 75.9%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.60 37.0 3.78e-01 71.7% 63.5%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.58 45.0 4.47e-01 100.0% 85.0%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.78e-01 79.2% 69.8%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.08e-01 77.4% 65.4%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.56 35.0 3.83e-01 92.5% 88.9%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 36.0 2.67e-01 98.1% 22.1%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 3.38e-01 92.5% 92.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 36.0 3.83e-01 98.1% 82.2%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 3.20e-01 96.2% 35.5%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 45.0 2.98e-01 96.2% 38.7%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 47.0 2.90e-01 100.0% 69.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 44.0 3.12e-01 96.2% 28.5%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 4.03e-01 98.1% 69.9%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.53 45.0 3.94e-01 94.3% 70.5%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 2.94e-01 98.1% 46.2%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.01e-01 98.1% 80.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.11e-01 96.2% 95.5%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.18e-01 96.2% 44.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3632364 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.77 55.0 3.81e-01 75.5% 28.5%
3199254 604.6.1.41 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF846 0.77 55.0 4.03e-01 75.5% 34.8%
3706043 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.77 57.0 3.99e-01 79.2% 32.5%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 61.0 4.26e-01 86.8% 46.5%
4960230 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.74 58.0 3.81e-01 83.0% 68.1%
3276296 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 63.0 3.93e-01 98.1% 84.7%
5026457 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.71 65.0 4.23e-01 100.0% 35.1%
4991990 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.70 60.0 4.86e-01 100.0% 50.0%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.70 55.0 4.54e-01 84.9% 95.7%
5065366 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.70 59.0 4.51e-01 100.0% 40.8%
4985406 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.68 54.0 4.79e-01 88.7% 96.2%
6331 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.68 61.0 4.51e-01 100.0% 94.7%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.68 58.0 3.45e-01 100.0% 56.5%
3171708 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 50.0 4.25e-01 100.0% 49.4%
3511668 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.67 55.0 3.17e-01 86.8% 20.9%
4937952 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.67 47.0 3.02e-01 100.0% 15.4%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.66 58.0 4.60e-01 100.0% 50.0%
5056521 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.65 56.0 4.42e-01 100.0% 46.4%
3487129 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 56.0 4.70e-01 96.2% 84.4%
4564327 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.65 50.0 4.34e-01 84.9% 86.7%
None 0.64 52.0 3.21e-01 88.7% 15.2%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 3.83e-01 100.0% 37.6%
5073891 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 51.0 4.18e-01 90.6% 100.0%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.63 55.0 3.72e-01 98.1% 71.7%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 52.0 3.66e-01 98.1% 28.4%
3708645 230.4.1.0 a+b two layers › T-fold › ApbE-like › ApbE-like 0.63 50.0 4.11e-01 100.0% 46.7%
3306268 327.5.1.6 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like 0.63 47.0 3.50e-01 81.1% 55.0%
5078000 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.62 54.0 3.36e-01 94.3% 25.8%
3583046 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 42.0 4.18e-01 88.7% 69.1%
3549847 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.62 53.0 3.22e-01 100.0% 38.9%
3167354 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.62 48.0 4.32e-01 84.9% 93.2%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.61 56.0 4.74e-01 100.0% 62.4%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.61 56.0 4.69e-01 100.0% 62.4%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.61 55.0 4.90e-01 100.0% 70.7%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.61 55.0 4.90e-01 100.0% 70.7%
3259141 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 42.0 4.12e-01 88.7% 66.7%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.61 50.0 4.51e-01 92.5% 94.7%
3218937 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 51.0 3.28e-01 96.2% 20.4%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.60 53.0 4.48e-01 100.0% 61.1%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 41.0 4.15e-01 79.2% 74.5%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 3.55e-01 100.0% 49.1%
3596282 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 46.0 3.95e-01 96.2% 95.8%
4996269 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 42.0 2.87e-01 88.7% 19.6%
3962463 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.56 44.0 4.39e-01 98.1% 81.8%
4384399 2003.1.5.138 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020+Methyltrans_SAM 0.56 49.0 2.80e-01 100.0% 20.7%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 50.0 4.14e-01 100.0% 57.8%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 4.44e-01 100.0% 84.6%
1815422 566.1.1.3 alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap 0.55 49.0 3.24e-01 100.0% 46.8%
3606376 304.55.2.8 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.55 49.0 3.93e-01 100.0% 92.4%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 49.0 3.00e-01 100.0% 17.2%
4977735 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 47.0 3.29e-01 96.2% 48.0%
3188735 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 40.0 3.30e-01 86.8% 56.5%
3215682 101.1.1.7 alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.53 46.0 3.40e-01 94.3% 38.5%
3472076 101.1.1.7 alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.53 46.0 3.34e-01 94.3% 37.0%
3430114 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 37.0 3.57e-01 88.7% 64.6%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 44.0 3.12e-01 92.5% 40.0%
4939413 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 30.0 3.08e-01 86.8% 54.0%