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KX557281.1__AOE44563.1__SEA_JUMBO_53__00053

Bact-Vir

KX557281.1__AOE44563.1__SEA_JUMBO_53__00053

Identity

Accession:
KX557281 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-121
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.91 78.0 7.78e-01 100.0% 86.9%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.91 78.0 7.72e-01 100.0% 85.5%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.91 79.0 7.88e-01 100.0% 89.2%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.89 77.0 7.93e-01 100.0% 94.7%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.88 76.0 6.60e-01 100.0% 62.2%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.88 77.0 7.59e-01 100.0% 87.8%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.87 73.0 7.39e-01 100.0% 88.2%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.86 73.0 6.10e-01 100.0% 54.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.86 74.0 7.66e-01 100.0% 94.7%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 74.0 7.24e-01 100.0% 85.2%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 78.0 6.64e-01 100.0% 63.9%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 73.0 5.61e-01 100.0% 44.1%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 74.0 6.11e-01 100.0% 55.8%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 74.0 7.42e-01 100.0% 91.7%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 72.0 7.25e-01 100.0% 90.8%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 75.0 5.74e-01 100.0% 46.7%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 7.47e-01 100.0% 89.3%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 73.0 5.58e-01 100.0% 45.1%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 72.0 7.22e-01 100.0% 91.6%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 74.0 5.70e-01 100.0% 47.1%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 76.0 7.16e-01 100.0% 85.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 72.0 5.48e-01 100.0% 45.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 69.0 5.20e-01 100.0% 41.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 73.0 5.49e-01 100.0% 45.0%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 7.03e-01 100.0% 90.6%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 70.0 6.98e-01 100.0% 92.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 71.0 6.90e-01 100.0% 89.9%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 72.0 5.44e-01 100.0% 46.3%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 6.79e-01 100.0% 90.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 68.0 5.19e-01 100.0% 45.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 66.0 5.11e-01 100.0% 45.0%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 70.0 6.03e-01 100.0% 74.3%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 29.0 4.01e-01 78.2% 74.2%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 21.0 3.06e-01 100.0% 58.9%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.57 39.0 4.18e-01 100.0% 82.5%
1lr0A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.55 38.0 3.82e-01 73.1% 81.0%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.88e-01 90.8% 97.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 28.0 3.37e-01 78.2% 85.7%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.92 79.0 7.65e-01 100.0% 81.5%
4480621 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.91 78.0 7.87e-01 100.0% 88.3%
1549269 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.91 78.0 7.81e-01 100.0% 87.6%
5977 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.91 79.0 7.88e-01 100.0% 89.2%
3015241 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.90 78.0 7.87e-01 100.0% 89.9%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.90 78.0 7.76e-01 100.0% 88.4%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.89 78.0 7.77e-01 100.0% 89.2%
4102438 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.89 78.0 7.78e-01 100.0% 90.0%
2522057 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.89 77.0 7.64e-01 100.0% 87.0%
3281112 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.89 77.0 7.76e-01 99.2% 90.0%
4876748 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 76.0 7.53e-01 100.0% 86.3%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.88 77.0 7.65e-01 100.0% 88.5%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 77.0 7.72e-01 100.0% 90.0%
4860663 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 77.0 7.19e-01 100.0% 77.1%
4251800 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 76.0 7.37e-01 100.0% 82.3%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 78.0 7.82e-01 100.0% 91.7%
2878151 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.88 76.0 7.56e-01 100.0% 88.4%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.88 77.0 7.62e-01 100.0% 88.6%
4407599 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.87 81.0 8.01e-01 100.0% 92.0%
3963789 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.87 76.0 7.67e-01 100.0% 90.8%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.87 77.0 7.62e-01 100.0% 88.7%
1549270 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.87 73.0 7.44e-01 100.0% 89.7%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.87 79.0 7.73e-01 100.0% 89.6%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.87 73.0 7.34e-01 100.0% 86.7%
3015239 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.87 74.0 7.42e-01 100.0% 88.2%
4083029 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.87 76.0 7.49e-01 100.0% 87.2%
4591776 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.87 77.0 7.47e-01 100.0% 85.4%
4050655 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.86 75.0 7.31e-01 100.0% 83.8%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.86 75.0 7.47e-01 100.0% 89.3%
3839477 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.86 76.0 7.54e-01 100.0% 88.8%
4069893 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.86 75.0 7.38e-01 100.0% 87.2%
2476832 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.85 79.0 7.48e-01 100.0% 85.2%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.84 73.0 7.34e-01 100.0% 90.0%
159555 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.84 74.0 7.27e-01 100.0% 86.6%
4146527 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.84 76.0 7.35e-01 100.0% 86.9%
4379629 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 72.0 7.18e-01 100.0% 89.2%
4460660 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.83 78.0 7.45e-01 100.0% 86.7%
4287244 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 74.0 7.39e-01 100.0% 92.5%
4646871 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 74.0 7.33e-01 100.0% 89.6%
426904 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 72.0 7.11e-01 100.0% 88.6%
4876750 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 72.0 7.09e-01 100.0% 87.2%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 72.0 7.19e-01 100.0% 89.4%
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 74.0 7.40e-01 100.0% 93.3%
2588759 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 74.0 7.40e-01 100.0% 92.6%
2878147 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 74.0 6.99e-01 100.0% 82.5%
3936915 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 75.0 7.29e-01 100.0% 90.8%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 7.08e-01 100.0% 89.2%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.78 70.0 6.91e-01 100.0% 90.4%
4261491 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 6.74e-01 100.0% 82.9%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 73.0 6.97e-01 100.0% 88.9%
3624709 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 70.0 6.82e-01 100.0% 87.7%
2096128 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 71.0 6.94e-01 100.0% 91.3%
3791518 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 68.0 6.80e-01 100.0% 90.8%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 70.0 6.32e-01 100.0% 74.7%
5000468 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 70.0 6.87e-01 100.0% 92.8%
3230926 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 68.0 6.61e-01 100.0% 87.7%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 71.0 6.75e-01 100.0% 88.1%
3873544 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 70.0 6.67e-01 100.0% 88.1%
3932752 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 66.0 6.52e-01 100.0% 90.4%
3478975 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 68.0 6.54e-01 100.0% 86.7%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.74 66.0 6.49e-01 98.3% 90.4%
3725759 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.74 68.0 6.02e-01 100.0% 91.7%
3760926 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 69.0 6.50e-01 100.0% 86.3%
3722115 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 69.0 6.31e-01 100.0% 92.0%
3685634 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 64.0 5.72e-01 93.3% 86.9%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 66.0 6.36e-01 100.0% 93.3%
4964412 274.1.1.66 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7266 0.56 37.0 4.07e-01 87.4% 80.0%
4941490 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 36.0 3.50e-01 88.2% 60.7%
3653856 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.96e-01 82.4% 61.2%
5014879 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 40.0 4.07e-01 97.5% 82.6%
3296864 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.51 25.0 3.24e-01 99.2% 86.7%
D2 high residues 140-238
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.86 81.0 7.52e-01 100.0% 88.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 79.0 7.12e-01 100.0% 84.4%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 7.14e-01 100.0% 86.1%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 77.0 6.97e-01 100.0% 87.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 76.0 6.22e-01 100.0% 62.8%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 76.0 6.20e-01 100.0% 61.6%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 76.0 6.99e-01 100.0% 87.0%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 6.95e-01 100.0% 84.7%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 6.99e-01 100.0% 86.6%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 74.0 7.11e-01 100.0% 93.8%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 71.0 6.44e-01 100.0% 89.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 70.0 6.71e-01 100.0% 93.8%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 68.0 6.25e-01 100.0% 91.9%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 63.0 4.80e-01 100.0% 41.2%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.68 61.0 4.46e-01 100.0% 42.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 59.0 4.22e-01 100.0% 44.3%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 34.0 4.15e-01 98.0% 94.8%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.55 32.0 3.29e-01 83.8% 57.9%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 3.03e-01 81.8% 56.7%
2r16A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.16e-01 99.0% 41.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.88e-01 92.9% 90.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4069893 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.84 79.0 7.25e-01 100.0% 86.4%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 78.0 7.14e-01 100.0% 88.8%
3281112 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.83 78.0 7.23e-01 100.0% 90.0%
4480621 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 77.0 7.22e-01 100.0% 87.5%
1549269 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 77.0 7.17e-01 100.0% 86.8%
4995742 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 77.0 7.43e-01 100.0% 90.0%
159555 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.82 77.0 7.02e-01 100.0% 85.8%
4876748 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 75.0 6.96e-01 100.0% 85.5%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 75.0 7.00e-01 100.0% 89.2%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 75.0 6.98e-01 100.0% 87.6%
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.93e-01 100.0% 87.5%
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.44e-01 100.0% 88.3%
4025727 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 68.0 6.03e-01 100.0% 86.4%
4995744 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.66 60.0 5.57e-01 100.0% 86.2%
4938286 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 40.0 3.79e-01 100.0% 58.3%
3885958 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 36.0 3.82e-01 80.8% 75.3%
3412495 220.1.1.85 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID_2 0.55 36.0 2.99e-01 100.0% 38.8%
3701705 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.55 37.0 3.72e-01 81.8% 68.0%
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.54 29.0 3.00e-01 100.0% 53.8%
4210866 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.51 36.0 3.83e-01 79.8% 85.9%
3411522 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.51 34.0 3.73e-01 78.8% 86.3%
3865742 319.1.1.12 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C 0.51 35.0 3.77e-01 79.8% 85.9%
D3 high residues 253-369
PDB
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 78.0 7.80e-01 100.0% 95.0%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 73.0 7.19e-01 96.6% 87.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 74.0 6.18e-01 100.0% 57.5%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 76.0 7.56e-01 100.0% 95.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 71.0 7.30e-01 94.9% 93.8%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 74.0 7.36e-01 100.0% 95.0%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 71.0 6.14e-01 95.7% 63.4%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 70.0 6.09e-01 96.6% 62.8%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 7.35e-01 100.0% 95.8%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 69.0 6.87e-01 96.6% 90.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 73.0 6.00e-01 100.0% 58.3%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 74.0 7.22e-01 100.0% 94.4%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 73.0 6.31e-01 100.0% 96.0%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.45e-01 100.0% 46.1%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 71.0 6.85e-01 97.4% 90.1%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 6.99e-01 100.0% 92.3%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 73.0 5.50e-01 100.0% 47.1%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.81e-01 100.0% 89.1%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 68.0 5.19e-01 96.6% 45.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 66.0 6.47e-01 94.9% 91.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 69.0 5.30e-01 100.0% 47.4%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 68.0 5.22e-01 100.0% 47.8%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.24e-01 100.0% 49.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.19e-01 100.0% 47.8%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 65.0 4.82e-01 100.0% 48.8%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 41.0 2.85e-01 76.9% 58.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 30.0 3.74e-01 84.6% 94.0%
2wadA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.88e-01 84.6% 97.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2096126 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 78.0 7.71e-01 100.0% 92.6%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 73.0 7.42e-01 100.0% 93.0%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 77.0 7.61e-01 100.0% 93.5%
4379629 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 74.0 7.41e-01 100.0% 92.5%
4650779 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 77.0 7.55e-01 100.0% 92.0%
5979 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 76.0 7.46e-01 100.0% 91.9%
4480621 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 72.0 7.16e-01 95.7% 88.3%
3015239 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 73.0 7.33e-01 100.0% 92.4%
4876750 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 75.0 7.34e-01 100.0% 90.4%
4437554 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 77.0 7.50e-01 100.0% 92.8%
426904 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 74.0 7.29e-01 100.0% 91.1%
1102993 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 74.0 6.93e-01 100.0% 79.6%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 72.0 7.22e-01 100.0% 92.4%
2325189 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 76.0 7.17e-01 100.0% 90.5%
3015241 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 70.0 7.05e-01 95.7% 89.9%
4542774 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 74.0 7.38e-01 100.0% 95.8%
4606763 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 73.0 7.24e-01 100.0% 94.2%
1549271 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 74.0 7.27e-01 100.0% 93.5%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 70.0 6.95e-01 95.7% 90.0%
4633559 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 75.0 7.28e-01 100.0% 92.2%
4162061 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 73.0 7.25e-01 100.0% 94.3%
2878147 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 74.0 6.96e-01 100.0% 86.1%
4336156 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 72.0 7.22e-01 100.0% 96.7%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 70.0 6.94e-01 95.7% 91.7%
4407599 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 70.0 6.91e-01 95.7% 92.0%
4360456 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 6.99e-01 100.0% 90.0%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 69.0 6.39e-01 95.7% 93.8%
5039218 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 70.0 6.75e-01 96.6% 93.8%
4992059 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 71.0 7.03e-01 100.0% 95.9%
3963789 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 68.0 6.74e-01 96.6% 91.7%
3256387 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 70.0 6.29e-01 98.3% 94.2%
4995028 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.77e-01 97.4% 94.4%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 68.0 6.77e-01 99.1% 92.6%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 68.0 6.56e-01 97.4% 90.0%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 67.0 5.97e-01 97.4% 88.5%
3787700 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 69.0 6.26e-01 100.0% 98.1%
3499821 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 69.0 6.66e-01 100.0% 94.6%
2834340 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 69.0 6.47e-01 100.0% 90.6%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 67.0 5.55e-01 97.4% 75.0%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 66.0 6.20e-01 95.7% 92.1%
3230926 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 68.0 6.60e-01 100.0% 92.3%
3406311 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.74 67.0 6.03e-01 97.4% 88.4%
3789624 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 67.0 6.26e-01 97.4% 90.0%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 65.0 6.24e-01 95.7% 91.9%
3932752 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 67.0 6.60e-01 99.1% 93.6%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 66.0 5.97e-01 97.4% 91.6%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 66.0 6.14e-01 97.4% 90.3%
3625038 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 66.0 6.23e-01 97.4% 90.0%
3728061 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 67.0 6.46e-01 99.1% 89.5%
2392831 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 67.0 6.51e-01 99.1% 92.9%
4995744 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 65.0 6.45e-01 100.0% 91.9%
3610047 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 66.0 5.88e-01 97.4% 89.4%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 67.0 6.60e-01 100.0% 97.6%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 65.0 6.51e-01 96.6% 95.0%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.73 67.0 6.56e-01 99.1% 94.4%
4027851 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 65.0 6.03e-01 97.4% 91.7%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 66.0 6.34e-01 100.0% 96.3%
3664260 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 64.0 5.61e-01 96.6% 89.4%
1178585 227.1.1.13 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.71 64.0 6.04e-01 98.3% 91.5%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 64.0 5.87e-01 97.4% 89.3%
3022412 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 64.0 6.00e-01 97.4% 87.3%
4373440 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 39.0 4.33e-01 71.8% 93.7%
4036940 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 36.0 3.91e-01 78.6% 80.0%
4089654 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 37.0 3.89e-01 77.8% 79.0%
4558682 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.51 42.0 3.46e-01 91.5% 76.4%
4239465 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.51 36.0 3.81e-01 73.5% 82.9%
3726528 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 40.0 2.65e-01 83.8% 77.9%