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KX557282.1__AON97382.1__SEA_NYCEIRAE_19__00019

Bact-Vir

KX557282.1__AON97382.1__SEA_NYCEIRAE_19__00019

Identity

Accession:
KX557282 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nyceiraevirus› Gordonia_phage_Nyceirae

TaxID: 1887651

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-147
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.73 44.0 4.84e-01 86.6% 73.8%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.65 49.0 3.98e-01 77.3% 88.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 52.0 4.81e-01 85.6% 83.3%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 51.0 4.60e-01 86.6% 93.8%
1xqrA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 49.0 3.49e-01 84.5% 36.3%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 47.0 4.41e-01 82.5% 93.0%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.58 40.0 3.80e-01 70.1% 94.7%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 39.0 3.93e-01 71.1% 69.3%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.56 40.0 3.53e-01 77.3% 76.0%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.80e-01 76.3% 86.7%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.55 43.0 3.60e-01 88.7% 80.7%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 43.0 4.01e-01 84.5% 81.3%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 34.0 4.00e-01 88.7% 91.2%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.54 39.0 4.13e-01 85.6% 85.9%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.53 45.0 3.34e-01 94.8% 76.0%
2uxwA02 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 34.0 3.24e-01 97.9% 53.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 39.0 3.63e-01 79.4% 79.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030987 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 51.0 5.62e-01 85.6% 90.0%
3272022 609.1.1.1 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.61 55.0 4.75e-01 100.0% 69.3%
3734047 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 47.0 3.47e-01 83.5% 44.8%
3757720 109.4.1.1413 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28415 0.61 47.0 3.31e-01 81.4% 31.7%
4148999 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.61 48.0 3.48e-01 86.6% 95.5%
4826991 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.60 29.0 3.61e-01 71.1% 74.2%
3210044 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.57 44.0 2.84e-01 83.5% 28.1%
4843090 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.54 42.0 4.05e-01 82.5% 90.2%
3579213 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 41.0 3.98e-01 81.4% 77.3%
3512473 170.1.1.11 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF1759 0.54 43.0 3.95e-01 83.5% 71.7%
3913373 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 41.0 3.86e-01 84.5% 90.8%
4889682 11.2.1.20 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerB 0.52 41.0 3.59e-01 86.6% 79.7%
3771203 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.81e-01 83.5% 86.3%
5065759 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.51 40.0 3.72e-01 84.5% 97.6%
3704359 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 40.0 3.27e-01 82.5% 52.0%
3392556 604.1.1.3 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MAP65_ASE1 0.51 36.0 3.36e-01 73.2% 77.6%