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KX557288.1__AON97495.1__SEA_CHEWYVIII_74__00074

Bact-Vir

KX557288.1__AON97495.1__SEA_CHEWYVIII_74__00074

Identity

Accession:
KX557288 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chewyvirus› Rhodococcus_phage_ChewyVIII

TaxID: 1887657

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 37.0 3.31e-01 100.0% 41.1%
3hm4A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.61 53.0 4.32e-01 100.0% 54.9%
1xkrA00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.60 52.0 3.91e-01 100.0% 42.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 36.0 3.43e-01 100.0% 55.4%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.19e-01 100.0% 46.6%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.06e-01 100.0% 38.3%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 44.0 3.05e-01 100.0% 43.7%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 41.0 3.49e-01 90.9% 88.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.77 46.0 5.47e-01 100.0% 92.0%
5014007 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.72 45.0 5.13e-01 100.0% 87.3%
3917143 304.100.1.0 ↗ a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.71 53.0 5.92e-01 100.0% 100.0%
4977431 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 45.0 4.90e-01 100.0% 80.0%
5015713 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.67 48.0 5.34e-01 100.0% 95.0%
4032618 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.66 44.0 4.95e-01 100.0% 94.5%
3968768 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 54.0 5.51e-01 100.0% 100.0%
3592795 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.59 39.0 2.68e-01 100.0% 18.3%
4204001 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 52.0 4.21e-01 100.0% 92.0%
4567910 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.58 50.0 3.79e-01 100.0% 45.1%
3429551 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 38.0 2.45e-01 75.3% 20.7%
3817532 109.4.1.2179 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, E_motif 0.54 38.0 2.31e-01 76.6% 13.7%
5055041 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 34.0 3.10e-01 100.0% 47.6%
5047756 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 3.07e-01 84.4% 84.7%
4968097 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 44.0 3.67e-01 100.0% 58.6%