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KX557288.1__AON97505.1__SEA_CHEWYVIII_84__00084
Bact-VirKX557288.1__AON97505.1__SEA_CHEWYVIII_84__00084
Identity
- Accession:
- KX557288 ↗
- Kingdom:
- phage
Quality
94.7
mean pLDDT
Taxonomy
TaxID: 1887657
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-50
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vs3A01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.67 | 47.0 | 3.62e-01 | 74.5% | 92.4% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.65 | 51.0 | 4.40e-01 | 89.4% | 97.4% |
| 2gmlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.62 | 42.0 | 3.66e-01 | 72.3% | 100.0% |
| 1dj0A02 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.56 | 43.0 | 3.44e-01 | 89.4% | 92.5% |
| 3k7mX02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.56 | 45.0 | 2.98e-01 | 89.4% | 55.8% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.54 | 42.0 | 3.05e-01 | 87.2% | 31.1% |
| 4jf8A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.53 | 41.0 | 2.91e-01 | 87.2% | 29.9% |
| 4bwgD00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 37.0 | 2.91e-01 | 93.6% | 36.1% |
| 2xjpA01 | 2.60.120.1560 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 2.70e-01 | 95.7% | 84.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.69 | 37.0 | 2.13e-01 | 100.0% | 5.9% | |
| 4939878 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.66 | 54.0 | 4.10e-01 | 97.9% | 71.2% |
| 4940518 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.65 | 53.0 | 4.30e-01 | 95.7% | 85.3% |
| 5016688 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.64 | 52.0 | 4.05e-01 | 97.9% | 72.5% |
| 4947028 | 230.6.1.0 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain | 0.63 | 50.0 | 4.09e-01 | 95.7% | 83.5% |
| 5027891 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.63 | 50.0 | 4.09e-01 | 93.6% | 84.2% |
| 2106023 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.62 | 51.0 | 4.03e-01 | 97.9% | 84.3% |
| 5039135 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.62 | 51.0 | 4.10e-01 | 100.0% | 79.0% |
| 4956514 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.60 | 50.0 | 3.92e-01 | 100.0% | 74.8% |
| 4988943 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.60 | 49.0 | 3.91e-01 | 100.0% | 76.4% |
| 4299576 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.58 | 44.0 | 3.86e-01 | 91.5% | 97.6% |
| 4304256 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.57 | 48.0 | 3.00e-01 | 93.6% | 39.8% |
| 3945348 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.56 | 43.0 | 3.34e-01 | 100.0% | 39.0% |
| 3838651 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.56 | 46.0 | 3.22e-01 | 91.5% | 30.0% |
| 4021920 | 59.1.1.7 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Tau95_N | 0.56 | 38.0 | 2.93e-01 | 85.1% | 28.9% |
| 5023503 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.56 | 43.0 | 3.84e-01 | 87.2% | 100.0% |
| 3839915 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.55 | 43.0 | 3.06e-01 | 93.6% | 29.3% |
| 4579299 | 11.1.1.150 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet | 0.54 | 39.0 | 3.07e-01 | 85.1% | 35.0% |
| 3687547 | 11.1.1.150 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet | 0.53 | 39.0 | 3.43e-01 | 85.1% | 48.0% |
| 3685439 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.52 | 37.0 | 2.10e-01 | 89.4% | 7.4% |
| 4127166 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.51 | 42.0 | 3.03e-01 | 97.9% | 52.7% |
| 4959201 | 815.1.1.1 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 | 0.51 | 41.0 | 3.28e-01 | 91.5% | 52.6% |
| 4024695 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.50 | 40.0 | 2.84e-01 | 93.6% | 56.9% |