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KX581096.3__AOT26769.1__pVa5_0088__00087
Bact-VirKX581096.3__AOT26769.1__pVa5_0088__00087
Identity
- Accession:
- KX581096 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Taxonomy
TaxID: 2890992
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-56_122-203
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jd4A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 57.0 | 4.90e-01 | 98.2% | 97.7% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.58 | 30.0 | 3.60e-01 | 74.6% | 74.7% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 4.10e-01 | 99.1% | 92.0% |
| 7ok5A06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.97e-01 | 98.2% | 90.8% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 34.0 | 3.57e-01 | 91.2% | 73.1% |
| 1sppB00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.51 | 34.0 | 3.46e-01 | 96.5% | 68.8% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.84e-01 | 89.5% | 83.7% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.50 | 28.0 | 3.28e-01 | 74.6% | 79.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1137418 | 3797.1.1.1 ↗ | beta meanders › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › DUF2782 | 0.58 | 30.0 | 3.60e-01 | 74.6% | 74.7% |
| 4591456 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 33.0 | 4.02e-01 | 72.8% | 100.0% |
| 3628203 | 10.32.1.207 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1-like_3rd | 0.53 | 35.0 | 3.31e-01 | 94.7% | 53.8% |
| 3690144 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.76e-01 | 77.2% | 93.9% |
D2
medium
residues 57-121
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.63 | 53.0 | 3.23e-01 | 95.4% | 20.4% |
| 2zgoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 4.05e-01 | 100.0% | 48.5% |
| 3bywC00 | 2.60.120.610 | Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain | 0.63 | 53.0 | 4.11e-01 | 100.0% | 46.3% |
| 5nldB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 51.0 | 4.22e-01 | 100.0% | 53.6% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 49.0 | 3.21e-01 | 87.7% | 91.4% |
| 3wucB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 50.0 | 4.12e-01 | 100.0% | 55.5% |
| 3bwsA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 51.0 | 3.29e-01 | 95.4% | 23.5% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 41.0 | 3.87e-01 | 83.1% | 57.3% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 49.0 | 3.15e-01 | 96.9% | 24.0% |
| 2h1qA01 | 3.30.390.100 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.58 | 41.0 | 3.34e-01 | 75.4% | 46.9% |
| 2qc5A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 3.16e-01 | 95.4% | 25.2% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 50.0 | 3.29e-01 | 100.0% | 37.7% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 38.0 | 3.41e-01 | 76.9% | 46.8% |
| 3dsmA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 45.0 | 2.98e-01 | 95.4% | 24.8% |
| 4crsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 3.08e-01 | 73.8% | 71.6% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 45.0 | 4.12e-01 | 93.8% | 71.1% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.55e-01 | 78.5% | 59.6% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 44.0 | 4.39e-01 | 93.8% | 88.4% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 33.0 | 3.39e-01 | 73.8% | 70.5% |
| 3ffvA00 | 3.40.1580.20 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein | 0.51 | 38.0 | 2.88e-01 | 83.1% | 96.1% |
| 1itvA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.50 | 42.0 | 3.13e-01 | 100.0% | 62.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3994301 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.74 | 66.0 | 4.82e-01 | 100.0% | 38.2% |
| 3715232 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.67 | 57.0 | 4.38e-01 | 100.0% | 48.1% |
| 4390303 | 5.1.3.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 | 0.67 | 56.0 | 3.25e-01 | 95.4% | 14.5% |
| 3367314 | 5.1.4.510 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 | 0.65 | 54.0 | 3.60e-01 | 95.4% | 27.0% |
| 3711234 | 5.1.4.175 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd | 0.65 | 48.0 | 3.21e-01 | 80.0% | 23.8% |
| 4029991 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 56.0 | 3.45e-01 | 98.5% | 76.6% |
| 3717628 | 5.1.3.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7914 | 0.64 | 53.0 | 3.47e-01 | 96.9% | 25.6% |
| 3730875 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 44.0 | 3.94e-01 | 76.9% | 50.5% |
| None | — | 0.62 | 51.0 | 3.27e-01 | 93.8% | 18.5% | |
| 4027391 | 10.1.1.114 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29973 | 0.61 | 49.0 | 4.36e-01 | 100.0% | 59.0% |
| 3800708 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.61 | 51.0 | 3.35e-01 | 100.0% | 96.4% |
| 3190113 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.38e-01 | 96.9% | 27.9% |
| 3280354 | 3699.1.1.0 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain | 0.61 | 37.0 | 4.03e-01 | 90.8% | 72.7% |
| 1713454 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.61 | 35.0 | 2.96e-01 | 90.8% | 34.3% |
| 3648232 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 50.0 | 3.21e-01 | 93.8% | 32.6% |
| 5032559 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.60 | 48.0 | 4.43e-01 | 92.3% | 93.3% |
| 3581955 | 5.1.4.450 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ldl_recept_b | 0.60 | 49.0 | 3.90e-01 | 93.8% | 55.0% |
| 3536338 | 5.1.3.145 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, DUF5050 | 0.60 | 49.0 | 3.31e-01 | 95.4% | 28.5% |
| 3788785 | 5.1.5.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N | 0.59 | 48.0 | 2.98e-01 | 96.9% | 18.5% |
| 3645253 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.59 | 47.0 | 3.16e-01 | 95.4% | 21.0% |
| 3237235 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.59 | 51.0 | 3.26e-01 | 100.0% | 94.6% |
| 3432908 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.59 | 50.0 | 3.19e-01 | 96.9% | 29.7% |
| 3419193 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.59 | 48.0 | 3.46e-01 | 95.4% | 44.3% |
| 3370448 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.58 | 47.0 | 2.86e-01 | 92.3% | 22.3% |
| 3791485 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.58 | 51.0 | 3.44e-01 | 100.0% | 45.9% |
| 3498556 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 47.0 | 2.98e-01 | 95.4% | 24.5% |
| 3204828 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 47.0 | 2.71e-01 | 93.8% | 45.4% |
| 3847094 | 5.1.5.102 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF | 0.56 | 49.0 | 3.27e-01 | 100.0% | 26.3% |
| 4998836 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 37.0 | 2.62e-01 | 70.8% | 29.1% |
| 3368676 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.79e-01 | 98.5% | 50.4% |
| 4154855 | 4205.1.1.1 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd | 0.54 | 40.0 | 3.01e-01 | 81.5% | 96.7% |
| 3271259 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 46.0 | 4.30e-01 | 100.0% | 92.9% |
| 5056156 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.54 | 42.0 | 4.04e-01 | 87.7% | 80.0% |
| 4130659 | 206.1.1.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › AceK_kinase | 0.53 | 42.0 | 2.81e-01 | 86.2% | 65.2% |
| 3635917 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.52 | 42.0 | 3.85e-01 | 95.4% | 66.7% |
| 5053366 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.52 | 45.0 | 2.85e-01 | 95.4% | 31.4% |
| 4210108 | 206.1.1.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › AceK_kinase | 0.52 | 40.0 | 2.73e-01 | 86.2% | 67.3% |
| 4093599 | 4205.1.1.1 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd | 0.51 | 38.0 | 2.88e-01 | 83.1% | 57.2% |