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KX581096.3AOT26785.1pVa5_0072__00071

Bact-Vir

KX581096.3__AOT26785.1__pVa5_0072__00071

Identity

Accession:: KX581096 ↗
Kingdom:: phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VspP_pVa5_12Jun

TaxID: 2890992

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-110

PDB

Domain cluster: rep: IMGVR_UViG_2684622743_000001-2684622743-2685523771__D41-153

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16459.12 best	Phage_TAC_13	60.1	2.90e-16	100.0%	85.7%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ob9A00	3.30.2220.20	Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like	0.68	61.0	5.75e-01	100.0%	84.1%
2v3sA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.57	37.0	3.66e-01	100.0%	60.4%
6j0qA02	2.40.30.120	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses	0.56	35.0	3.31e-01	100.0%	50.5%
4h75A00	2.80.10.70	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty	0.53	35.0	2.76e-01	100.0%	29.6%
7f79A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.53	48.0	3.94e-01	100.0%	59.0%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.52	32.0	3.42e-01	98.9%	71.1%
1bvuA01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.52	47.0	3.99e-01	100.0%	67.1%
4ic5A02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.50	40.0	3.85e-01	100.0%	76.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3968270	3103.1.1.2 ↗	alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_13	0.79	74.0	6.82e-01	100.0%	81.8%
333304	6050.1.1.1 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1	0.74	62.0	5.92e-01	100.0%	79.8%
3257563	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.65	41.0	4.05e-01	100.0%	60.0%
3264641	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.59	44.0	2.79e-01	81.1%	36.6%
3351840	284.1.3.2 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C	0.58	37.0	4.09e-01	100.0%	84.1%
3230369	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.52	42.0	2.86e-01	88.9%	36.3%
3216210	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.52	29.0	3.69e-01	98.9%	98.0%
3961371	1.1.5.8 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx	0.52	32.0	3.37e-01	94.4%	68.8%
4995758	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.52	41.0	4.22e-01	100.0%	91.8%
4517865	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	37.0	4.04e-01	100.0%	90.7%
3449628	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.51	39.0	3.61e-01	100.0%	64.3%
3337072	221.1.1.4 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1	0.51	36.0	3.55e-01	100.0%	68.0%