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KX581096.3__AOT26835.1__pVa5_0023__00023

Bact-Vir

KX581096.3__AOT26835.1__pVa5_0023__00023

Identity

Accession:
KX581096 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-51
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.75 64.0 4.16e-01 100.0% 73.6%
4jp0A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 52.0 5.42e-01 93.0% 100.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.12e-01 100.0% 65.1%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.26e-01 100.0% 91.1%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 53.0 4.03e-01 100.0% 53.5%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 48.0 4.22e-01 93.0% 63.0%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.62 50.0 4.16e-01 100.0% 65.9%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 50.0 4.36e-01 100.0% 67.6%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.15e-01 100.0% 70.7%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 43.0 4.20e-01 100.0% 68.8%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.61 48.0 4.15e-01 100.0% 63.0%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.59 45.0 3.65e-01 95.3% 89.4%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 44.0 3.40e-01 86.0% 74.8%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 44.0 3.96e-01 97.7% 84.3%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 46.0 4.16e-01 100.0% 84.4%
4ociA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 43.0 3.92e-01 95.3% 84.8%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 2.67e-01 100.0% 59.4%
4yfjB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 38.0 2.76e-01 81.4% 47.1%
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 40.0 2.36e-01 100.0% 27.8%
3uo9C01 1.10.238.210 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.51 39.0 3.40e-01 93.0% 80.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 82.0 7.50e-01 100.0% 80.0%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 81.0 7.22e-01 100.0% 75.0%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 77.0 6.93e-01 100.0% 75.0%
4022380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 77.0 5.74e-01 100.0% 43.8%
3609939 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.86 75.0 5.61e-01 100.0% 42.9%
3712226 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.85 73.0 5.69e-01 100.0% 47.4%
4013698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 71.0 6.31e-01 100.0% 76.9%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.82 69.0 6.46e-01 100.0% 83.6%
3590733 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.82 67.0 6.43e-01 93.0% 80.0%
4927804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 69.0 5.86e-01 100.0% 57.3%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 69.0 5.82e-01 100.0% 58.7%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.80 67.0 6.49e-01 100.0% 92.0%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 67.0 6.31e-01 100.0% 83.6%
3603740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 67.0 5.82e-01 100.0% 62.9%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.15e-01 100.0% 80.0%
4979322 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 66.0 5.76e-01 100.0% 65.7%
3618386 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.37e-01 95.3% 97.8%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 65.0 5.58e-01 100.0% 58.7%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 65.0 5.67e-01 100.0% 65.7%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 5.86e-01 100.0% 69.2%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 5.97e-01 100.0% 83.6%
4053154 101.1.1.16 alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.76 64.0 5.64e-01 100.0% 64.6%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.76 64.0 5.71e-01 100.0% 67.7%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 5.18e-01 100.0% 52.9%
5028095 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 63.0 4.87e-01 100.0% 41.9%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.60e-01 100.0% 67.7%
3997947 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.99e-01 97.7% 92.0%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 5.84e-01 100.0% 75.0%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 5.73e-01 100.0% 80.0%
3589089 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.74 60.0 4.73e-01 100.0% 41.9%
3944587 101.1.4.26 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DNA_meth_N 0.74 63.0 5.44e-01 100.0% 62.9%
5029224 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.65e-01 100.0% 73.3%
3958858 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.74 63.0 4.53e-01 100.0% 90.0%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.96e-01 100.0% 95.6%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.74 59.0 5.51e-01 100.0% 73.3%
4959187 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.73 60.0 5.84e-01 100.0% 88.0%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.63e-01 95.3% 84.0%
3787144 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.73 62.0 5.23e-01 100.0% 82.7%
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.62e-01 100.0% 80.0%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.50e-01 100.0% 76.4%
5029219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.58e-01 100.0% 80.0%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.72 58.0 5.29e-01 100.0% 67.7%
3960847 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.72 58.0 4.30e-01 100.0% 33.8%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.71 57.0 5.34e-01 100.0% 78.3%
3958338 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.71 58.0 5.77e-01 100.0% 97.8%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.23e-01 100.0% 67.7%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.41e-01 97.7% 76.4%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.71 57.0 5.21e-01 100.0% 67.7%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.70 58.0 4.89e-01 100.0% 60.0%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.69 56.0 5.49e-01 100.0% 98.0%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.69 54.0 4.99e-01 100.0% 72.3%
4678981 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 55.0 5.37e-01 97.7% 84.0%
4978899 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 53.0 4.59e-01 100.0% 85.0%
3973616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.97e-01 100.0% 71.7%
4175293 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.51e-01 100.0% 63.5%
3488744 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.66 54.0 4.90e-01 100.0% 83.1%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.65 52.0 4.41e-01 100.0% 57.6%
3222266 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.68e-01 100.0% 86.2%
3195161 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 53.0 4.94e-01 100.0% 81.8%
3228867 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.60 50.0 3.43e-01 97.7% 69.0%
3769569 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.55 44.0 3.99e-01 97.7% 84.6%
4233472 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.55 44.0 2.90e-01 100.0% 46.5%
3516468 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.55 41.0 3.76e-01 97.7% 65.7%
5043976 3678.1.1.0 alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain 0.54 42.0 3.31e-01 100.0% 53.3%
3173335 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.54 38.0 3.71e-01 93.0% 73.3%
3729174 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.53 41.0 3.15e-01 100.0% 37.7%
D2 medium residues 137-204
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.62 51.0 4.81e-01 89.7% 97.6%
2lcuA01 1.20.910.20 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › 0.56 46.0 3.35e-01 88.2% 40.5%
4tkzA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.56 48.0 3.97e-01 100.0% 93.8%
1pdoA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.56 48.0 3.96e-01 100.0% 91.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 36.0 3.69e-01 77.9% 70.1%
2rp5A00 1.10.150.830 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 43.0 3.63e-01 88.2% 99.1%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.53 44.0 3.16e-01 94.1% 85.8%
1y88A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 33.0 3.51e-01 76.5% 71.2%
6h21A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 41.0 3.01e-01 88.2% 91.2%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 35.0 3.47e-01 83.8% 67.6%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.51 32.0 3.09e-01 95.6% 54.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3876854 109.4.1.375 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRC8_N 0.69 52.0 3.33e-01 80.9% 49.4%
3324312 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 51.0 4.40e-01 83.8% 89.1%
3565607 603.1.1.87 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TRC8_N 0.64 52.0 3.22e-01 89.7% 55.7%
4989822 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 35.0 3.88e-01 80.9% 70.9%
2991844 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.60 46.0 3.89e-01 83.8% 50.5%
3682205 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.83e-01 91.2% 80.7%
5074957 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 48.0 4.77e-01 86.8% 94.3%
3475297 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 49.0 4.24e-01 89.7% 100.0%
3753626 4266.1.1.8 alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › TRC8_N 0.59 52.0 3.44e-01 100.0% 46.3%
3307439 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.56 49.0 4.05e-01 98.5% 63.9%
3808906 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 3.02e-01 100.0% 61.7%
3463170 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.52 47.0 3.54e-01 100.0% 45.5%