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KX581096.3__AOT26849.1__pVa5_0009__00009

Bact-Vir

KX581096.3__AOT26849.1__pVa5_0009__00009

Identity

Accession:
KX581096 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 49.0 3.27e-01 72.5% 71.7%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.71 52.0 3.48e-01 80.4% 78.0%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 47.0 3.02e-01 72.5% 81.5%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 46.0 2.78e-01 72.5% 91.2%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 48.0 2.89e-01 78.4% 91.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.64 50.0 3.98e-01 88.2% 70.6%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 45.0 2.82e-01 76.5% 71.9%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.63 45.0 2.62e-01 76.5% 21.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.41e-01 84.3% 77.3%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.56e-01 80.4% 40.5%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 48.0 3.65e-01 90.2% 53.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 42.0 4.06e-01 70.6% 69.0%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 49.0 3.54e-01 92.2% 51.6%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.61 48.0 3.55e-01 88.2% 34.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.79e-01 72.5% 70.4%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.24e-01 100.0% 29.1%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.07e-01 78.4% 39.9%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 46.0 4.26e-01 90.2% 70.8%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.96e-01 100.0% 96.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.49e-01 92.2% 82.4%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.60 47.0 3.80e-01 90.2% 84.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 3.81e-01 74.5% 77.1%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.60 46.0 3.24e-01 94.1% 94.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.13e-01 100.0% 31.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 52.0 3.97e-01 100.0% 65.3%
1kllA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.36e-01 82.4% 37.5%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.17e-01 76.5% 35.2%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 2.92e-01 82.4% 81.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 3.86e-01 80.4% 79.2%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 47.0 3.25e-01 98.0% 77.1%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 2.81e-01 78.4% 93.3%
2hqmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 2.78e-01 78.4% 92.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 46.0 3.80e-01 90.2% 75.3%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 45.0 3.83e-01 88.2% 88.8%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.58 46.0 3.78e-01 98.0% 74.3%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.20e-01 72.5% 65.7%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 45.0 3.34e-01 94.1% 88.2%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 40.0 3.19e-01 76.5% 41.9%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.56 45.0 3.65e-01 98.0% 92.9%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.56 42.0 3.24e-01 90.2% 88.9%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 39.0 3.82e-01 76.5% 70.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.64e-01 74.5% 91.7%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.31e-01 86.3% 84.5%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 3.09e-01 84.3% 33.6%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 42.0 3.37e-01 96.1% 88.0%
3hheA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 41.0 3.66e-01 86.3% 73.1%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 3.81e-01 92.2% 86.3%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 37.0 2.79e-01 80.4% 25.2%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.53 46.0 3.15e-01 100.0% 78.5%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 40.0 2.41e-01 84.3% 83.6%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 38.0 2.90e-01 86.3% 50.0%
2hq4A00 3.40.1600.10 Alpha Beta › 3-Layer(aba) Sandwich › PH1570-like fold › PH1570-like 0.52 39.0 2.92e-01 88.2% 29.7%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 2.72e-01 90.2% 72.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.66e-01 96.1% 82.8%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 42.0 2.55e-01 94.1% 50.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 51.0 3.86e-01 72.5% 40.0%
1269916 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.71 49.0 3.79e-01 72.5% 90.3%
3690378 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.71 50.0 3.18e-01 76.5% 67.9%
4017541 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.70 48.0 2.84e-01 72.5% 83.7%
4023722 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.70 48.0 2.81e-01 72.5% 70.7%
2048175 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.70 48.0 3.72e-01 72.5% 89.5%
3589957 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.68 48.0 3.28e-01 76.5% 92.8%
3973734 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.68 49.0 2.90e-01 78.4% 79.5%
4997881 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.68 49.0 3.29e-01 78.4% 93.5%
3963171 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 49.0 2.94e-01 78.4% 81.6%
3290242 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.67 49.0 2.95e-01 78.4% 58.9%
4169393 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.67 53.0 3.08e-01 88.2% 16.1%
5035582 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 49.0 3.82e-01 80.4% 45.2%
3291632 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 48.0 2.79e-01 76.5% 75.2%
4458401 375.1.1.17 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f 0.67 53.0 3.33e-01 88.2% 30.2%
None 0.66 53.0 3.17e-01 88.2% 22.4%
3589758 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 48.0 3.32e-01 78.4% 93.7%
4527022 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.66 48.0 2.82e-01 78.4% 79.0%
3566394 4099.1.1.8 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF4581 0.66 50.0 4.13e-01 86.3% 80.0%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.61e-01 82.4% 86.2%
4241631 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 47.0 3.20e-01 78.4% 93.3%
4177510 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.64 48.0 3.72e-01 84.3% 54.4%
3475240 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.64 45.0 4.44e-01 74.5% 94.5%
4066093 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.64 46.0 2.83e-01 78.4% 39.8%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.21e-01 80.4% 68.0%
3740511 2.1.1.89 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.63 44.0 3.75e-01 74.5% 58.9%
3475462 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.63 44.0 3.78e-01 74.5% 61.2%
3549024 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.63 45.0 2.67e-01 78.4% 74.1%
3486496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.42e-01 76.5% 90.9%
3676012 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.62 45.0 2.70e-01 76.5% 20.3%
3958910 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 53.0 3.93e-01 100.0% 38.6%
3810757 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.61 45.0 2.60e-01 78.4% 18.3%
4180367 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 53.0 3.73e-01 100.0% 33.3%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 53.0 3.92e-01 100.0% 40.7%
4032881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 53.0 3.96e-01 100.0% 40.0%
4302391 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.61 45.0 4.20e-01 80.4% 90.8%
4157389 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.61 41.0 3.85e-01 70.6% 69.2%
3590354 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 52.0 3.92e-01 100.0% 40.7%
3350152 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.61 45.0 2.70e-01 78.4% 26.2%
4973219 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.61 42.0 3.13e-01 76.5% 29.0%
3419491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.32e-01 80.4% 88.3%
3310862 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 43.0 4.13e-01 76.5% 70.0%
3511278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.21e-01 84.3% 68.6%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 51.0 3.80e-01 100.0% 39.3%
1382449 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 51.0 3.71e-01 100.0% 93.5%
4940157 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.60 46.0 4.51e-01 82.4% 85.5%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 51.0 4.13e-01 100.0% 51.4%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 50.0 3.77e-01 100.0% 40.7%
3615936 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 50.0 3.10e-01 100.0% 46.4%
3283881 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 43.0 3.26e-01 80.4% 34.8%
4263901 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.59 42.0 2.59e-01 78.4% 94.2%
5083877 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 51.0 3.80e-01 100.0% 40.0%
4546885 2003.1.2.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2+FAD_oxidored 0.59 41.0 3.04e-01 78.4% 94.4%
4944306 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.59 42.0 2.96e-01 76.5% 24.6%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.58 50.0 4.62e-01 96.1% 83.1%
4283597 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 40.0 3.89e-01 78.4% 63.3%
1160734 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 41.0 3.71e-01 76.5% 57.5%
134195 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 40.0 3.98e-01 78.4% 77.2%
4992901 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.58 49.0 3.15e-01 100.0% 51.5%
5728 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 41.0 4.07e-01 78.4% 75.0%
3592949 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 41.0 3.83e-01 76.5% 64.6%
3715910 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 2.97e-01 100.0% 39.7%
4985176 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 41.0 3.30e-01 78.4% 62.7%
1199657 9002.1.1.1 a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 0.57 42.0 4.18e-01 86.3% 82.1%
3283266 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 42.0 3.98e-01 84.3% 66.2%
4019781 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 3.08e-01 100.0% 22.3%
4356168 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 46.0 2.93e-01 100.0% 56.9%
3708366 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.56 41.0 2.92e-01 78.4% 37.5%
166126 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 40.0 4.07e-01 86.3% 78.8%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 3.64e-01 100.0% 83.3%
4991248 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 45.0 3.15e-01 98.0% 45.9%
2522038 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.55 39.0 3.79e-01 76.5% 71.2%
3652079 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 46.0 3.65e-01 100.0% 100.0%
3465146 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 39.0 2.31e-01 84.3% 22.5%
4982692 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.54 42.0 3.25e-01 86.3% 84.3%
3955689 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 45.0 3.73e-01 100.0% 53.0%
3700076 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 44.0 2.64e-01 98.0% 60.2%
4948490 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.97e-01 98.0% 77.3%
3420323 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 41.0 2.90e-01 100.0% 58.1%
3598700 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.51e-01 98.0% 40.0%
D2 medium residues 52-127
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 55.0 4.32e-01 100.0% 86.1%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 54.0 4.33e-01 97.4% 80.9%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 40.0 3.65e-01 82.9% 47.7%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 3.46e-01 100.0% 80.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.60 46.0 4.65e-01 81.6% 82.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 49.0 5.02e-01 100.0% 100.0%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 44.0 3.67e-01 81.6% 53.3%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.59 51.0 3.64e-01 96.1% 41.2%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 32.0 3.28e-01 78.9% 52.7%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 44.0 2.89e-01 82.9% 24.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 48.0 4.62e-01 94.7% 83.7%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 42.0 2.89e-01 78.9% 39.8%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.56 41.0 4.34e-01 98.7% 92.4%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 30.0 3.37e-01 97.4% 69.1%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 47.0 3.27e-01 100.0% 98.2%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 36.0 4.00e-01 86.8% 91.4%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.80e-01 84.2% 78.8%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 4.43e-01 92.1% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.14e-01 94.7% 88.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 44.0 3.92e-01 97.4% 83.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 32.0 3.44e-01 73.7% 74.6%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.86e-01 97.4% 84.8%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.50 43.0 4.30e-01 100.0% 100.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 42.0 3.44e-01 98.7% 93.6%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.07e-01 92.1% 77.8%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.50 42.0 3.30e-01 100.0% 82.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026577 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.69 45.0 5.15e-01 82.9% 92.7%
4261505 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.64 33.0 3.55e-01 77.6% 56.9%
3512529 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.63 52.0 4.19e-01 93.4% 87.5%
4015773 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 53.0 4.82e-01 93.4% 99.0%
3415735 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.61 51.0 4.78e-01 94.7% 98.9%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.60 44.0 4.77e-01 94.7% 100.0%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.60 47.0 4.45e-01 84.2% 71.9%
4500525 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 31.0 3.51e-01 97.4% 65.5%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 51.0 4.55e-01 97.4% 98.2%
5810 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 50.0 4.58e-01 94.7% 74.7%
3627771 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 47.0 4.59e-01 94.7% 78.8%
3960733 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.58 45.0 4.38e-01 84.2% 75.3%
3782631 2484.8.1.1 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.58 44.0 3.03e-01 84.2% 41.4%
3237884 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 47.0 3.62e-01 94.7% 73.3%
3167601 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.58 47.0 4.47e-01 94.7% 100.0%
3977677 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 36.0 4.05e-01 75.0% 87.3%
3518948 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.57 43.0 4.18e-01 81.6% 97.6%
3216657 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 47.0 3.61e-01 96.1% 74.0%
4078104 5.1.4.261 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, EIF3I 0.57 42.0 2.75e-01 78.9% 24.1%
3829628 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.57 31.0 3.09e-01 77.6% 46.3%
2530280 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.57 31.0 3.46e-01 75.0% 65.6%
5028555 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.56 40.0 4.23e-01 84.2% 89.2%
2096018 330.17.1.1 a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA4 › Anti-CRISPR protein AcrIIA4 › AcrIIA4 0.56 47.0 4.60e-01 98.7% 85.1%
3727780 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.56 46.0 3.08e-01 92.1% 30.8%
3319085 4099.1.1.27 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.55 47.0 4.35e-01 96.1% 95.0%
5006277 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 29.0 3.43e-01 92.1% 69.4%
3233501 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 45.0 4.02e-01 92.1% 92.2%
4223216 214.1.1.7 a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.55 44.0 3.75e-01 89.5% 73.8%
3502260 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.54 45.0 3.92e-01 97.4% 92.0%
3620802 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 46.0 4.04e-01 98.7% 86.4%
1005590 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.53 46.0 2.94e-01 100.0% 23.7%
3218417 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 3.73e-01 76.3% 94.1%
3768845 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.53 38.0 3.51e-01 77.6% 61.9%
4862766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 35.0 3.55e-01 80.3% 66.2%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 44.0 3.96e-01 96.1% 88.2%
3509348 214.1.1.15 a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.53 45.0 3.09e-01 100.0% 41.0%
3508119 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.52 44.0 3.91e-01 98.7% 91.7%
3511269 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.52 45.0 3.92e-01 98.7% 90.8%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.52 41.0 4.13e-01 94.7% 88.2%
3923314 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 37.0 2.73e-01 78.9% 46.9%
1423566 331.4.1.3 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.51 36.0 3.60e-01 85.5% 73.7%
None 0.51 42.0 3.68e-01 93.4% 77.5%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 43.0 2.86e-01 93.4% 28.3%
3637570 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.51 38.0 3.41e-01 85.5% 95.8%
3645309 4099.1.1.27 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.50 42.0 3.97e-01 96.1% 93.6%
1289505 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.50 37.0 2.53e-01 81.6% 92.9%
3720660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 40.0 4.04e-01 94.7% 90.7%
3336515 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 42.0 2.90e-01 100.0% 81.9%