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KX588251.1__AOT28116.1__SEA_JANE_58__00058

Bact-Vir

KX588251.1__AOT28116.1__SEA_JANE_58__00058

Identity

Accession:
KX588251 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Liefievirus› Mycobacterium_phage_Jane

TaxID: 1882465

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-32
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 46.0 3.23e-01 100.0% 52.7%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.61 45.0 2.76e-01 100.0% 40.8%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 42.0 3.79e-01 90.0% 84.6%
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.28e-01 86.7% 85.4%
2uv8A05 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 43.0 2.33e-01 80.0% 66.8%
8k9yA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.55e-01 100.0% 9.5%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.56 40.0 3.37e-01 100.0% 58.1%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 39.0 2.64e-01 73.3% 24.1%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 40.0 3.62e-01 96.7% 55.6%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 37.0 2.73e-01 100.0% 72.1%
3dhuA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 36.0 2.87e-01 70.0% 29.3%
1ii2A03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.51 35.0 2.25e-01 100.0% 78.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 36.0 2.75e-01 90.0% 29.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506791 2.1.1.69 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.66 46.0 3.07e-01 80.0% 17.9%
4943369 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.64 46.0 2.77e-01 80.0% 10.2%
3734711 7581.1.1.3 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.61 44.0 2.34e-01 80.0% 65.4%
3928114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 48.0 2.70e-01 100.0% 13.2%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 41.0 2.98e-01 86.7% 40.0%
3364540 2.11.1.2 ↗ beta barrels › OB-fold › Antifungal protein (AGAFP) › Antifungal protein (AGAFP) › WAK_assoc 0.59 43.0 4.28e-01 86.7% 77.1%
3455391 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.59 40.0 2.82e-01 100.0% 22.2%
4003164 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.57 45.0 2.65e-01 100.0% 31.6%
None — 0.57 42.0 2.48e-01 90.0% 9.2%
3697477 7581.1.1.7 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.57 42.0 2.43e-01 73.3% 6.5%
4984442 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 38.0 2.55e-01 100.0% 88.3%
3791383 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 39.0 2.94e-01 73.3% 25.3%
3383010 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.54 38.0 2.71e-01 90.0% 23.1%
3821922 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.54 38.0 2.72e-01 93.3% 28.8%
3649839 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.53 35.0 2.62e-01 90.0% 24.0%
3870224 2.1.1.267 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30830 0.53 36.0 2.62e-01 100.0% 22.2%
3250073 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.53 41.0 2.79e-01 100.0% 23.6%
4406214 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 36.0 2.94e-01 100.0% 33.3%
3394531 6159.1.1.10 ↗ extended segments › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain › zf_UBZ 0.52 38.0 3.55e-01 100.0% 60.0%
5002993 377.2.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Auto_anti-p27 0.51 38.0 3.71e-01 90.0% 82.9%
141372 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.50 35.0 2.74e-01 90.0% 29.7%
4967615 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 36.0 2.36e-01 86.7% 14.5%