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KX620751.1__AOT24441.1__DOUCETTE_28__00028

Bact-Vir

KX620751.1__AOT24441.1__DOUCETTE_28__00028

Identity

Accession:
KX620751 ↗
Kingdom:
phage

Quality

68.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-87
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.74 46.0 3.58e-01 86.4% 30.1%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.66 41.0 3.22e-01 83.3% 28.9%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 40.0 3.48e-01 77.3% 39.4%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.64 53.0 3.99e-01 92.4% 51.2%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 49.0 3.31e-01 86.4% 28.2%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.61 46.0 4.37e-01 95.5% 67.5%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 46.0 3.67e-01 84.8% 78.2%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 48.0 3.31e-01 89.4% 88.7%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 37.0 3.05e-01 100.0% 31.3%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 43.0 4.28e-01 95.5% 76.5%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.26e-01 84.8% 34.5%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 50.0 3.43e-01 93.9% 82.2%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 48.0 3.39e-01 95.5% 88.4%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.16e-01 97.0% 29.9%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.98e-01 83.3% 87.8%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 45.0 3.56e-01 100.0% 68.7%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 40.0 4.06e-01 90.9% 77.3%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.03e-01 95.5% 33.7%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 43.0 4.19e-01 95.5% 74.7%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.55 42.0 3.16e-01 84.8% 33.9%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 34.0 3.21e-01 86.4% 50.0%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 46.0 4.36e-01 98.5% 95.1%
1cp9B02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 41.0 4.03e-01 97.0% 75.3%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 44.0 4.19e-01 95.5% 75.6%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.30e-01 84.8% 40.4%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.54 41.0 3.52e-01 83.3% 61.7%
1ihjA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 40.0 3.68e-01 84.8% 73.4%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 32.0 2.79e-01 78.8% 37.4%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 46.0 3.17e-01 97.0% 63.0%
7dmdA01 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.53 40.0 3.24e-01 83.3% 44.7%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 38.0 3.32e-01 83.3% 46.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.52 37.0 2.80e-01 77.3% 74.0%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 4.32e-01 92.4% 93.7%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 40.0 3.28e-01 84.8% 72.9%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 36.0 2.92e-01 74.2% 35.3%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.52 39.0 3.32e-01 84.8% 93.4%
1na6A01 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 35.0 2.66e-01 100.0% 26.9%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.52 44.0 3.28e-01 97.0% 62.5%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.07e-01 84.8% 79.9%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 3.19e-01 83.3% 78.1%
8enbA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 38.0 3.56e-01 81.8% 98.8%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 3.00e-01 100.0% 66.3%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 43.0 3.47e-01 100.0% 54.3%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 38.0 3.67e-01 83.3% 75.3%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.50 38.0 3.08e-01 87.9% 98.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595969 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.70 50.0 4.15e-01 89.4% 43.5%
3790940 306.3.1.2 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.69 57.0 4.73e-01 92.4% 90.8%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 43.0 4.01e-01 75.8% 51.8%
3927548 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 50.0 3.32e-01 84.8% 29.5%
3501524 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.62 41.0 3.36e-01 92.4% 33.3%
3236742 2484.1.1.233 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.62 51.0 3.29e-01 90.9% 82.6%
3731834 7579.1.1.127 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_3 0.61 49.0 3.16e-01 90.9% 84.5%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 52.0 4.43e-01 98.5% 68.2%
3467382 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 52.0 3.35e-01 100.0% 28.7%
3167022 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.59 47.0 2.84e-01 87.9% 31.8%
5000341 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.59 50.0 4.18e-01 100.0% 95.2%
3189622 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.59 49.0 3.59e-01 100.0% 39.4%
3875081 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.59 43.0 3.13e-01 89.4% 26.7%
3797946 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 46.0 3.63e-01 86.4% 42.9%
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 3.99e-01 92.4% 88.0%
5048398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 3.87e-01 83.3% 81.9%
3629019 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.59 45.0 3.58e-01 87.9% 40.0%
339577 10.6.1.1 beta sandwiches › jelly-roll › Calcium-mediated lectin › Calcium-mediated lectin › PA-IIL 0.58 45.0 3.67e-01 84.8% 93.0%
3505181 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 49.0 4.65e-01 98.5% 92.5%
4514345 274.1.1.50 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Spore_YunB 0.58 44.0 3.50e-01 84.8% 73.8%
4000713 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.58 49.0 3.11e-01 95.5% 82.3%
3487157 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 2.76e-01 84.8% 15.9%
4979052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.95e-01 81.8% 60.0%
3275455 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 47.0 3.95e-01 93.9% 64.2%
4011538 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.57 43.0 2.91e-01 80.3% 54.7%
3946213 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 49.0 3.81e-01 98.5% 72.7%
3739251 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.70e-01 87.9% 21.4%
3713083 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 41.0 3.31e-01 83.3% 39.2%
163477 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 43.0 3.66e-01 84.8% 78.1%
None 0.56 38.0 2.44e-01 71.2% 98.8%
5035440 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.56 39.0 3.12e-01 80.3% 35.6%
3600301 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.31e-01 83.3% 40.8%
3194180 221.17.1.2 a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 0.55 49.0 3.65e-01 100.0% 88.8%
2082805 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 39.0 3.48e-01 74.2% 79.3%
3817727 295.1.1.44 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29049 0.55 38.0 3.45e-01 83.3% 51.6%
3720662 883.1.1.23 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.55 41.0 3.04e-01 84.8% 43.0%
4954462 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 41.0 2.58e-01 83.3% 31.3%
4538867 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 47.0 2.93e-01 98.5% 18.3%
3867302 5.1.4.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.54 45.0 2.92e-01 100.0% 24.8%
None 0.54 43.0 2.72e-01 89.4% 22.0%
3839949 7503.1.1.7 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB 0.53 40.0 3.16e-01 84.8% 78.1%
3550844 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.12e-01 84.8% 59.4%
4527641 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.53 36.0 2.61e-01 86.4% 23.6%
3328150 1.1.1.27 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.53 38.0 3.10e-01 77.3% 64.6%
3710596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 34.0 2.73e-01 72.7% 29.7%
3259935 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.52 44.0 3.06e-01 100.0% 81.0%
3484105 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 43.0 3.39e-01 95.5% 58.7%
3692182 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 38.0 3.81e-01 81.8% 81.4%
3627810 3246.1.1.1 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.51 34.0 2.74e-01 78.8% 34.1%
4929294 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 42.0 3.21e-01 100.0% 76.1%
3634341 11.1.3.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.51 40.0 3.15e-01 93.9% 94.1%
3723574 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.50 37.0 3.29e-01 81.8% 54.3%