←Back to structures

KX774321.1__AOZ63630.1__SEA_WEASELS2_40__00040

Bact-Vir

KX774321.1__AOZ63630.1__SEA_WEASELS2_40__00040

Identity

Accession:
KX774321 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weaselvirus› Rhodococcus_phage_Weasels2

TaxID: 1897437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-195
PDB
Domain cluster: rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00101__D224-326
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.87 58.0 7.06e-01 92.8% 100.0%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 46.0 5.88e-01 93.5% 100.0%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 46.0 5.48e-01 92.8% 86.5%
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 46.0 5.33e-01 93.5% 82.2%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.75 54.0 6.16e-01 93.5% 98.1%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.74 55.0 6.19e-01 100.0% 98.1%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.72 45.0 5.46e-01 94.2% 94.6%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.72 43.0 4.87e-01 97.8% 78.3%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.71 49.0 5.67e-01 98.6% 96.1%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 31.0 3.53e-01 89.2% 54.7%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.64 53.0 5.59e-01 94.2% 96.8%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.63 47.0 4.75e-01 94.2% 76.1%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 37.0 4.67e-01 93.5% 100.0%
3s98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 32.0 3.77e-01 100.0% 72.6%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 32.0 3.93e-01 100.0% 81.4%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 32.0 3.96e-01 95.7% 82.4%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 30.0 3.67e-01 97.1% 77.9%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 31.0 3.77e-01 95.7% 80.7%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.94e-01 100.0% 78.3%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 28.0 3.00e-01 100.0% 52.8%
3lzqA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.56 42.0 4.10e-01 100.0% 69.4%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.54 35.0 3.76e-01 95.7% 76.1%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 35.0 3.77e-01 96.4% 76.9%
2q7nA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.69e-01 100.0% 81.2%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 36.0 4.19e-01 94.2% 99.0%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.53 30.0 3.22e-01 88.5% 61.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 38.0 4.26e-01 97.8% 98.1%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 27.0 3.54e-01 99.3% 97.0%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 49.0 4.27e-01 100.0% 88.6%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.66e-01 100.0% 85.7%
3czbA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 46.0 4.32e-01 99.3% 78.2%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 35.0 3.58e-01 100.0% 69.8%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 33.0 3.51e-01 100.0% 71.5%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 33.0 3.58e-01 99.3% 76.9%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 44.0 4.25e-01 92.8% 81.1%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 34.0 3.52e-01 97.8% 71.2%
1pjqB05 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 34.0 3.57e-01 100.0% 74.6%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.50e-01 100.0% 80.6%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.71e-01 100.0% 90.5%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 35.0 3.80e-01 100.0% 82.6%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 34.0 3.59e-01 100.0% 76.6%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974469 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.87 58.0 7.02e-01 92.8% 98.9%
4419943 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.86 59.0 6.97e-01 97.8% 97.0%
3165363 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.85 61.0 5.72e-01 100.0% 61.8%
4370157 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.85 62.0 6.16e-01 97.8% 72.7%
4396535 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 45.0 5.90e-01 93.5% 98.8%
5028227 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 48.0 6.15e-01 92.1% 100.0%
3726745 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 57.0 6.61e-01 93.5% 100.0%
4200720 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 47.0 5.99e-01 92.1% 97.6%
5074983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 48.0 5.91e-01 94.2% 94.4%
3976753 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.78 61.0 5.99e-01 99.3% 74.7%
5045002 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 46.0 5.71e-01 92.1% 91.1%
4205030 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 47.0 5.93e-01 92.1% 97.6%
5060748 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 48.0 5.44e-01 94.2% 79.1%
5077330 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 46.0 5.25e-01 92.1% 78.1%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 52.0 6.23e-01 93.5% 98.9%
5074694 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 45.0 4.52e-01 90.6% 57.1%
4880811 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 42.0 5.68e-01 84.9% 100.0%
3486347 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 47.0 5.65e-01 94.2% 89.5%
5053341 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.77 49.0 5.78e-01 94.2% 90.0%
3267813 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.77 45.0 5.68e-01 89.9% 95.3%
3187650 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.77 60.0 6.59e-01 97.8% 98.3%
3477728 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.77 49.0 5.87e-01 94.2% 94.7%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 47.0 5.80e-01 93.5% 95.6%
3010131 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.76 54.0 6.15e-01 93.5% 94.4%
4967302 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 48.0 5.87e-01 94.2% 96.7%
5053172 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 46.0 5.81e-01 94.2% 98.8%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.76 49.0 5.83e-01 94.2% 94.7%
4947745 1.1.2.45 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 0.76 48.0 5.89e-01 94.2% 97.8%
4299713 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 56.0 6.40e-01 94.2% 100.0%
4948370 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 47.0 4.74e-01 93.5% 62.3%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 52.0 6.14e-01 97.8% 98.0%
4943103 1.1.2.45 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 0.76 46.0 5.84e-01 92.1% 100.0%
5053174 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 47.0 5.77e-01 97.1% 96.7%
3393273 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 46.0 5.74e-01 92.8% 98.8%
5047687 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 42.0 5.49e-01 88.5% 96.2%
5073963 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 45.0 5.76e-01 92.8% 98.8%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.75 51.0 5.82e-01 97.8% 91.4%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 49.0 5.74e-01 95.7% 92.0%
5066567 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 46.0 5.48e-01 92.1% 89.5%
4927622 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 47.0 5.78e-01 94.2% 97.8%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 46.0 5.70e-01 94.2% 96.7%
5032396 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 49.0 5.78e-01 94.2% 93.0%
3391397 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 46.0 5.60e-01 94.2% 95.6%
4970084 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 45.0 5.73e-01 91.4% 100.0%
3740563 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 47.0 5.66e-01 94.2% 94.7%
5074498 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 46.0 5.06e-01 94.2% 75.7%
3927447 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.74 53.0 5.92e-01 97.8% 92.7%
5001338 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 48.0 5.75e-01 100.0% 96.8%
31 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.73 45.0 5.54e-01 93.5% 94.5%
3312403 1.1.2.24 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 0.73 59.0 6.21e-01 96.4% 92.8%
5052052 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.73 47.0 5.67e-01 100.0% 95.8%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.73 49.0 3.73e-01 94.2% 31.5%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 50.0 5.82e-01 94.2% 97.0%
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.73 43.0 5.44e-01 92.8% 100.0%
4995073 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.72 44.0 5.59e-01 89.9% 100.0%
3789369 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 49.0 5.70e-01 94.2% 96.0%
3735360 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 51.0 5.72e-01 94.2% 94.5%
3406944 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 50.0 5.06e-01 95.7% 72.9%
4115281 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 56.0 6.13e-01 94.2% 100.0%
3264281 1.1.2.33 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF29515 0.69 54.0 5.64e-01 99.3% 87.7%
4586145 1.1.2.3 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Barwin 0.68 46.0 5.40e-01 79.9% 95.0%
4030729 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.68 49.0 5.58e-01 97.8% 97.1%
4200338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 47.0 5.40e-01 95.0% 96.2%
4039425 1.1.2.22 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.66 46.0 5.31e-01 93.5% 95.2%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 38.0 4.53e-01 93.5% 87.4%
4412522 1.1.2.3 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Barwin 0.62 55.0 5.37e-01 100.0% 87.2%
3180110 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.62 42.0 4.68e-01 82.7% 86.4%
2968637 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.61 54.0 5.04e-01 92.8% 79.6%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 54.0 4.79e-01 94.2% 69.6%
3813200 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.61 42.0 4.57e-01 97.8% 85.1%
5020071 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.59 45.0 4.73e-01 91.4% 87.2%
3688059 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 4.83e-01 94.2% 77.6%
3828556 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 50.0 5.04e-01 92.1% 95.0%
3332068 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 49.0 4.74e-01 92.1% 100.0%
3255732 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 37.0 4.37e-01 93.5% 97.9%
3489254 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 34.0 3.12e-01 100.0% 47.0%
5008659 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.52 45.0 4.54e-01 91.4% 93.6%
4990996 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.51 45.0 4.50e-01 92.8% 92.8%
4198892 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.50 43.0 4.45e-01 94.2% 100.0%