←Back to structures

KX774321.1__AOZ63841.1__SEA_WEASELS2_263__00253

Bact-Vir

KX774321.1__AOZ63841.1__SEA_WEASELS2_263__00253

Identity

Accession:
KX774321 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weaselvirus› Rhodococcus_phage_Weasels2

TaxID: 1897437

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: MH153812.1__AWN04606.1__PBI_GRAYSON_278__00263__D2-71
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.80 54.0 4.59e-01 70.6% 47.7%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.75 51.0 4.41e-01 70.6% 50.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.68 50.0 4.62e-01 80.9% 98.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 49.0 3.77e-01 82.4% 95.8%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.66 50.0 4.76e-01 100.0% 68.3%
2aeuA01 3.90.1150.70 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.63 48.0 3.82e-01 83.8% 66.4%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.63 41.0 3.56e-01 100.0% 41.8%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.62 48.0 3.84e-01 85.3% 69.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 43.0 3.67e-01 72.1% 94.5%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 54.0 4.57e-01 97.1% 100.0%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 53.0 4.66e-01 98.5% 94.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.59 54.0 4.24e-01 100.0% 60.1%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 40.0 3.46e-01 100.0% 44.0%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.59 52.0 3.82e-01 100.0% 39.1%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 46.0 3.47e-01 86.8% 94.7%
3ajdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 43.0 3.18e-01 80.9% 98.5%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 4.35e-01 79.4% 84.6%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.57 49.0 4.25e-01 94.1% 78.4%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.71e-01 100.0% 56.5%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 49.0 4.48e-01 98.5% 100.0%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.90e-01 100.0% 72.1%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.56 47.0 3.63e-01 100.0% 57.3%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 35.0 3.60e-01 100.0% 65.7%
1alo006 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 39.0 3.28e-01 97.1% 40.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.55 39.0 3.74e-01 73.5% 66.7%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.74e-01 100.0% 92.9%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 44.0 3.65e-01 91.2% 87.5%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 39.0 4.04e-01 79.4% 85.9%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.45e-01 88.2% 93.4%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.52 45.0 3.42e-01 100.0% 64.5%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 46.0 4.08e-01 100.0% 99.0%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 43.0 3.40e-01 95.6% 68.9%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.51 43.0 3.45e-01 98.5% 78.9%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.12e-01 98.5% 39.5%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 41.0 3.41e-01 92.6% 100.0%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 42.0 2.91e-01 95.6% 49.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734833 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.78 71.0 6.46e-01 100.0% 95.6%
3623001 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.76 69.0 6.54e-01 100.0% 96.2%
5053646 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.74 55.0 5.15e-01 86.8% 63.5%
5035567 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.74 58.0 5.85e-01 88.2% 84.1%
2756142 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.72 52.0 5.71e-01 86.8% 94.4%
5017022 331.1.1.27 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.72 56.0 3.72e-01 86.8% 22.8%
4647064 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.70 50.0 5.35e-01 85.3% 85.0%
4302852 331.22.1.2 ↗ a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.69 53.0 3.86e-01 82.4% 33.5%
3971924 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.68 50.0 4.73e-01 85.3% 64.3%
4660203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 53.0 4.29e-01 88.2% 68.0%
4024839 3307.1.1.0 ↗ a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 0.65 56.0 4.73e-01 100.0% 88.3%
5003862 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 43.0 3.43e-01 70.6% 87.9%
4002994 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.63 55.0 4.03e-01 100.0% 35.9%
5077903 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.63 53.0 3.24e-01 97.1% 27.4%
5072250 316.1.1.41 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 0.62 54.0 4.05e-01 97.1% 44.1%
3646130 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.59 53.0 3.56e-01 100.0% 46.7%
4336615 1093.1.1.0 ↗ a+b two layers › DUF4479 › DUF4479 › DUF4479 0.59 45.0 3.97e-01 86.8% 57.9%
5064100 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.58 44.0 4.02e-01 82.4% 61.1%
4950140 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.58 50.0 4.21e-01 97.1% 95.7%
4948951 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 50.0 4.21e-01 98.5% 93.3%
4950145 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.58 50.0 4.17e-01 98.5% 91.1%
4948949 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.57 48.0 4.17e-01 92.6% 99.0%
3825377 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 40.0 2.36e-01 77.9% 18.5%
3999634 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 46.0 4.37e-01 98.5% 95.3%
3739595 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.54 44.0 3.52e-01 91.2% 74.3%
3993856 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.53 43.0 3.45e-01 89.7% 84.3%
3938138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.45e-01 91.2% 73.1%
3325173 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.33e-01 91.2% 66.9%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.53 39.0 3.44e-01 80.9% 96.2%
4529669 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.52 42.0 3.35e-01 88.2% 80.7%
3927766 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 43.0 3.40e-01 91.2% 71.0%
5006876 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.23e-01 77.9% 96.5%
3234045 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 41.0 3.44e-01 88.2% 89.2%
4977778 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.53e-01 91.2% 97.4%
5045350 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.40e-01 91.2% 86.2%
3736099 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.51 46.0 2.80e-01 97.1% 34.1%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.50 37.0 3.68e-01 100.0% 75.7%
4279762 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 3.55e-01 82.4% 71.8%
4980071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 41.0 3.37e-01 89.7% 88.0%