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KX774374.1__AOY11828.1__X__00023

Bact-Vir

KX774374.1__AOY11828.1__X__00023

Identity

Accession:
KX774374 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Playavirus› Salinivibrio_phage_SMHB1

TaxID: 1897436

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-92
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5znqA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 49.0 3.94e-01 87.5% 97.8%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.61 39.0 4.48e-01 100.0% 96.7%
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.60 51.0 3.57e-01 94.3% 56.1%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.60 32.0 3.06e-01 100.0% 41.1%
1l1qA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 3.58e-01 80.7% 97.8%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 41.0 3.91e-01 100.0% 59.8%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.59 32.0 3.24e-01 90.9% 51.1%
8thmA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.59 33.0 3.41e-01 100.0% 56.2%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 37.0 3.69e-01 96.6% 63.3%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 38.0 3.72e-01 88.6% 63.8%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.91e-01 100.0% 54.2%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 25.0 2.80e-01 100.0% 47.8%
1nd7A01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.55 42.0 3.36e-01 83.0% 60.2%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.56e-01 81.8% 82.2%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.54 41.0 3.09e-01 83.0% 62.3%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.15e-01 93.2% 65.6%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 38.0 3.94e-01 96.6% 80.0%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.52 41.0 3.29e-01 85.2% 70.5%
3v3kD00 1.20.1260.90 Mainly Alpha › Up-down Bundle › Ferritin › 0.51 45.0 3.73e-01 100.0% 57.3%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.59e-01 93.2% 72.5%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.50 42.0 3.58e-01 93.2% 98.7%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 33.0 3.28e-01 80.7% 63.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248822 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.62 50.0 3.93e-01 88.6% 99.5%
3190457 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.59 47.0 3.68e-01 88.6% 95.5%
3290023 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.58 47.0 3.71e-01 88.6% 96.2%
3273259 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 50.0 3.66e-01 98.9% 51.4%
3538384 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 3.05e-01 100.0% 28.4%
3719561 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 43.0 3.02e-01 83.0% 36.1%
3742155 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.56 46.0 2.89e-01 95.5% 52.9%
3716320 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 44.0 3.95e-01 86.4% 97.6%
4029993 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.55 50.0 3.22e-01 100.0% 24.8%
3826856 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.55 35.0 3.93e-01 100.0% 87.7%
3591919 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.03e-01 100.0% 20.5%
3935962 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 49.0 2.92e-01 100.0% 20.7%
4011706 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 2.73e-01 92.0% 24.1%
3236656 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.55 44.0 3.89e-01 100.0% 57.1%
3364027 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.53 37.0 2.81e-01 71.6% 29.3%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 46.0 4.00e-01 94.3% 85.4%
5036966 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.52 37.0 3.48e-01 95.5% 60.0%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.52 38.0 3.06e-01 78.4% 52.2%
3694417 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.52 42.0 2.99e-01 88.6% 72.7%
4191333 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 44.0 2.90e-01 98.9% 57.9%
4329701 632.1.1.30 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › PFF1_TM 0.51 36.0 2.71e-01 95.5% 28.1%
5012836 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 38.0 2.78e-01 81.8% 92.0%
3403813 603.2.1.12 ↗ alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.51 44.0 2.98e-01 100.0% 44.6%
4954714 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.50 40.0 3.22e-01 87.5% 70.0%
None — 0.50 44.0 3.00e-01 100.0% 54.2%
3440738 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.50 37.0 3.49e-01 77.3% 86.7%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 34.0 3.25e-01 71.6% 86.4%
1945728 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 44.0 3.20e-01 100.0% 75.6%
D2 high residues 96-147
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.64 45.0 4.54e-01 71.2% 98.0%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.63 51.0 4.45e-01 90.4% 87.7%
3qo6A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 50.0 4.09e-01 92.3% 97.1%
7co7D03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 53.0 4.37e-01 98.1% 75.5%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 51.0 4.34e-01 96.2% 89.5%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 51.0 4.14e-01 96.2% 81.0%
6ieoA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 48.0 4.04e-01 92.3% 90.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.55e-01 100.0% 81.7%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 48.0 4.28e-01 98.1% 98.7%
1olzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.81e-01 86.5% 73.0%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.54e-01 98.1% 95.2%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.74e-01 86.5% 62.5%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 43.0 3.76e-01 92.3% 74.2%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 36.0 3.55e-01 94.2% 60.7%
2l97A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 46.0 3.81e-01 96.2% 71.7%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 2.88e-01 90.4% 69.4%
4ghnA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 44.0 3.68e-01 96.2% 80.0%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.21e-01 82.7% 71.4%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 37.0 2.49e-01 71.2% 64.5%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.32e-01 86.5% 77.7%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.36e-01 86.5% 91.3%
1cs6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.34e-01 86.5% 65.7%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 43.0 3.05e-01 92.3% 95.5%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 33.0 3.62e-01 75.0% 86.8%
4as2A02 1.20.1440.310 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.52 41.0 3.36e-01 88.5% 97.1%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.11e-01 80.8% 78.3%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.31e-01 86.5% 92.1%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 40.0 3.46e-01 94.2% 52.3%
4c98A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 2.91e-01 82.7% 93.4%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.51 41.0 3.54e-01 94.2% 79.3%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 33.0 3.72e-01 94.2% 91.9%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.05e-01 100.0% 70.8%
1tgjA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.50 42.0 3.30e-01 94.2% 74.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988260 268.2.1.0 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes 0.69 57.0 3.89e-01 100.0% 31.2%
4418858 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.64 53.0 4.12e-01 92.3% 90.4%
3654497 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.63 51.0 3.84e-01 92.3% 92.6%
4200319 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.63 51.0 4.06e-01 92.3% 94.5%
3306810 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.63 51.0 4.00e-01 92.3% 91.3%
3808326 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.63 51.0 3.99e-01 92.3% 85.2%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 55.0 3.16e-01 98.1% 11.3%
3738463 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.61 49.0 3.96e-01 92.3% 94.5%
3839715 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.61 50.0 4.33e-01 94.2% 94.1%
4604072 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.61 52.0 4.23e-01 98.1% 81.0%
3720043 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.60 48.0 3.91e-01 90.4% 91.4%
4416983 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.58 49.0 3.97e-01 100.0% 68.2%
3808085 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.57 46.0 3.79e-01 92.3% 87.0%
331590 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.57 46.0 3.84e-01 96.2% 63.8%
3739517 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.87e-01 86.5% 41.0%
3882388 11.1.1.110 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_2 0.55 42.0 3.47e-01 88.5% 79.0%
4945234 361.1.1.20 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_C 0.55 32.0 3.01e-01 94.2% 46.2%
3969587 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.52 42.0 3.14e-01 94.2% 60.7%
3396108 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 38.0 3.24e-01 86.5% 91.0%
3883286 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 38.0 3.00e-01 84.6% 70.4%
5050504 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.51 42.0 2.96e-01 94.2% 54.9%
3418892 5.1.8.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 0.51 35.0 2.75e-01 96.2% 32.2%