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KX774374.1__AOY11830.1__X__00025

Bact-Vir

KX774374.1__AOY11830.1__X__00025

Identity

Accession:
KX774374 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Playavirus› Salinivibrio_phage_SMHB1

TaxID: 1897436

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
Domain cluster: rep: NC_001609.1__NP_042043.1__P4p13__00013__D2-53_80-133
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04606.19 best Ogr_Delta 40.0 4.10e-10 39.1% 78.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 38.0 4.43e-01 100.0% 77.6%
2gf6A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 45.0 4.27e-01 100.0% 57.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.64 31.0 2.86e-01 94.5% 35.7%
1z54A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 43.0 4.06e-01 100.0% 58.3%
2oafB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 43.0 3.94e-01 93.6% 53.5%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 4.31e-01 99.1% 84.7%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 31.0 3.33e-01 84.5% 56.7%
2hx5A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 41.0 3.81e-01 93.6% 56.6%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 37.0 2.83e-01 83.6% 28.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 35.0 3.82e-01 82.7% 76.6%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 35.0 3.65e-01 83.6% 71.7%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.92e-01 90.0% 45.5%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 4.09e-01 90.0% 95.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 36.0 3.23e-01 83.6% 49.0%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 40.0 3.12e-01 84.5% 87.0%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.97e-01 90.0% 63.8%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.86e-01 90.0% 82.8%
1b4tA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.51 35.0 3.15e-01 70.0% 100.0%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 41.0 3.14e-01 88.2% 90.9%
5wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 4.09e-01 99.1% 97.8%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 45.0 3.45e-01 100.0% 80.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.85 42.0 6.01e-01 86.4% 98.2%
4784456 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.76 36.0 4.75e-01 94.5% 84.5%
5069076 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.61 39.0 3.84e-01 78.2% 60.0%
5038095 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.61 39.0 3.77e-01 79.1% 57.6%
5038083 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.60 35.0 3.39e-01 84.5% 50.0%
3743698 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.59 47.0 3.36e-01 84.5% 95.7%
3601400 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 46.0 3.10e-01 87.3% 23.0%
3494118 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 44.0 3.86e-01 100.0% 55.7%
5056878 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.57 45.0 3.25e-01 87.3% 34.7%
3785047 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.57 44.0 3.26e-01 85.5% 90.5%
3987211 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.56 44.0 2.92e-01 85.5% 23.9%
3281482 222.1.1.34 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD 0.55 39.0 3.70e-01 81.8% 60.0%
3594936 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.55 49.0 3.86e-01 99.1% 99.6%
3167956 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.55 44.0 2.95e-01 87.3% 24.9%
3960325 222.1.1.10 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.54 36.0 3.67e-01 82.7% 67.3%
3575937 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 3.21e-01 100.0% 31.8%
4961581 5.1.3.270 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR 0.54 44.0 3.03e-01 90.0% 44.8%
4347162 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.54 41.0 4.11e-01 79.1% 98.2%
3406485 1181.1.1.0 ↗ 0.54 33.0 4.01e-01 99.1% 97.1%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 41.0 3.51e-01 79.1% 64.1%
5074243 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 32.0 3.49e-01 100.0% 69.5%
3719326 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.85e-01 81.8% 26.2%
4311344 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.54 41.0 4.07e-01 80.9% 97.4%
3833804 5.1.2.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › GINT1_N 0.53 42.0 3.00e-01 85.5% 27.6%
4880562 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.53 43.0 2.89e-01 90.0% 32.7%
None — 0.51 45.0 2.78e-01 100.0% 29.2%
4011446 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 44.0 3.20e-01 98.2% 94.2%
3451705 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.50 34.0 3.12e-01 97.3% 53.6%
3692244 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.50 43.0 2.51e-01 100.0% 11.3%
D2 medium residues 114-143
PDB
Domain cluster: representative