←Back to structures

KX815270.1__APC43890.1__P19250A_0005__00005

Bact-Vir

KX815270.1__APC43890.1__P19250A_0005__00005

Identity

Accession:
KX815270 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methylophilaceae_phage_P19250A

TaxID: 1913040

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 196-300_415-445
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 26.0 3.41e-01 100.0% 84.4%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.53 16.0 2.76e-01 80.9% 80.5%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.52 19.0 2.88e-01 74.3% 87.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948943 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 25.0 3.09e-01 83.1% 67.9%
5078891 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 20.0 3.01e-01 84.6% 89.1%
D2 medium residues 301-414_446-462
PDB
Domain cluster: rep: MW960032.1__QWY83292.1__X__00086__D281-376
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05065.20 best Phage_capsid 56.2 5.10e-15 98.5% 34.5%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.80 56.0 6.23e-01 88.5% 88.6%
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.73 48.0 5.51e-01 87.0% 90.6%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.69 46.0 5.37e-01 87.0% 95.7%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.61 40.0 3.83e-01 92.4% 57.7%
1yfsA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 45.0 3.72e-01 90.1% 43.3%
2zf8A02 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.52 32.0 3.75e-01 82.4% 88.0%
3fk8A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 33.0 3.36e-01 74.0% 66.4%
4rhaA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.50 37.0 3.78e-01 78.6% 85.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952452 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 71.0 5.31e-01 91.6% 49.5%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 70.0 5.26e-01 89.3% 49.5%
2651377 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 68.0 5.03e-01 90.8% 47.1%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 60.0 4.48e-01 89.3% 44.0%
1877546 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.70 59.0 4.42e-01 88.5% 50.3%
2989340 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 58.0 4.35e-01 88.5% 52.7%
5083079 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 59.0 4.32e-01 89.3% 43.1%
3088027 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 58.0 4.51e-01 89.3% 48.1%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 58.0 4.44e-01 89.3% 47.9%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 58.0 4.43e-01 90.8% 52.0%
2639625 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.68 57.0 4.32e-01 87.8% 47.1%
1807471 298.4.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.67 42.0 4.45e-01 91.6% 69.8%
2538948 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 57.0 4.32e-01 92.4% 47.8%
2989506 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.65 56.0 4.22e-01 90.8% 56.9%
5041371 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.65 55.0 4.09e-01 89.3% 48.7%
3977525 2485.3.1.4 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.63 53.0 3.88e-01 88.5% 42.6%
2989289 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 53.0 3.98e-01 91.6% 52.9%
2553816 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.62 52.0 4.05e-01 88.5% 46.4%
4873245 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.62 51.0 5.19e-01 87.0% 99.2%
5002389 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.61 52.0 4.00e-01 90.1% 55.0%
4955362 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.61 50.0 4.12e-01 87.8% 53.4%
194954 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.60 50.0 4.07e-01 87.8% 53.0%
4991535 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.60 49.0 3.99e-01 87.8% 50.6%
5011908 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.59 50.0 4.05e-01 89.3% 50.4%
2831773 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.59 49.0 3.87e-01 88.5% 46.6%
4058764 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 27.0 3.45e-01 72.5% 80.8%
4484870 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.54 45.0 4.34e-01 88.5% 79.3%
3401017 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 36.0 3.90e-01 98.5% 88.2%
3670330 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 39.0 3.93e-01 93.9% 79.3%
4208255 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.51 42.0 3.93e-01 88.5% 78.1%