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KX815270.1__APC43898.1__P19250A_0013__00013

Bact-Vir

KX815270.1__APC43898.1__P19250A_0013__00013

Identity

Accession:
KX815270 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methylophilaceae_phage_P19250A

TaxID: 1913040

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-37_103-147
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.62 32.0 3.68e-01 95.2% 68.1%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.28e-01 100.0% 67.8%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 41.0 4.10e-01 100.0% 86.2%
3m9lA02 1.10.260.80 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.51 34.0 3.70e-01 77.4% 84.3%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.50 41.0 3.60e-01 88.7% 74.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000274 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 43.0 3.93e-01 93.5% 54.1%
3773798 3615.1.1.1 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Fzo_mitofusin 0.54 38.0 2.35e-01 100.0% 12.3%
D2 medium residues 38-102
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i88A00 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.62 49.0 3.63e-01 87.7% 74.7%
1hxdA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 47.0 3.41e-01 89.2% 55.8%
8agyA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.59 40.0 2.74e-01 70.8% 73.8%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 36.0 3.36e-01 76.9% 50.6%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 46.0 3.22e-01 100.0% 33.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 45.0 3.15e-01 100.0% 50.0%
2jfqA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 32.0 2.69e-01 75.4% 34.2%
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.82e-01 83.1% 66.0%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 37.0 3.70e-01 84.6% 74.3%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 2.74e-01 95.4% 38.5%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 38.0 3.65e-01 87.7% 100.0%
6k6iA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 38.0 2.76e-01 86.2% 90.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403757 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.63 53.0 3.24e-01 93.8% 27.6%
4669970 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 43.0 2.98e-01 98.5% 22.8%
3218028 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.59 44.0 3.02e-01 81.5% 55.3%
4310836 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.58 40.0 2.80e-01 98.5% 20.9%
4261739 3068.2.1.1 ↗ a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C 0.58 46.0 3.90e-01 89.2% 53.6%
4935350 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 44.0 3.34e-01 84.6% 35.2%
5064913 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.57 48.0 3.30e-01 92.3% 29.8%
3514943 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 40.0 3.99e-01 76.9% 98.6%
5054667 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.56 42.0 3.81e-01 83.1% 61.1%
2760149 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.56 31.0 2.76e-01 72.3% 38.0%
3245811 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.55 44.0 3.22e-01 86.2% 40.6%
3670166 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.55 45.0 2.85e-01 98.5% 16.7%
3224878 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.54 33.0 3.01e-01 72.3% 43.3%
5026112 3457.1.1.0 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.54 43.0 3.07e-01 90.8% 85.5%
3596821 4268.2.1.0 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA 0.53 42.0 3.56e-01 89.2% 56.5%
4295850 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.53 38.0 2.58e-01 80.0% 19.3%
4078369 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.52 43.0 3.21e-01 100.0% 74.0%
3968802 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.52 41.0 3.61e-01 86.2% 73.5%
3273218 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.51 41.0 3.73e-01 92.3% 75.8%
3213629 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 39.0 2.60e-01 89.2% 25.3%
4278554 7011.1.1.1 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.51 41.0 2.67e-01 98.5% 93.6%
3998932 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 37.0 2.82e-01 86.2% 30.6%
3240251 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.58e-01 95.4% 97.9%
3263125 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 42.0 3.20e-01 100.0% 100.0%
3732935 109.2.1.39 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Ldi 0.50 38.0 2.41e-01 86.2% 97.1%