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KX815270.1__APC43908.1__P19250A_0023__00023

Bact-Vir

KX815270.1__APC43908.1__P19250A_0023__00023

Identity

Accession:
KX815270 ↗
Kingdom:
phage

Quality

45.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methylophilaceae_phage_P19250A

TaxID: 1913040

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 555-677
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00801__D162-274
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.70 49.0 5.56e-01 100.0% 96.7%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 53.0 5.62e-01 100.0% 94.3%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 48.0 5.32e-01 100.0% 97.9%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 45.0 4.67e-01 91.1% 75.9%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 47.0 5.24e-01 99.2% 100.0%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 47.0 5.07e-01 100.0% 90.4%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 48.0 5.20e-01 100.0% 99.0%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.61 49.0 4.18e-01 84.6% 65.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 43.0 3.99e-01 87.0% 59.7%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 4.39e-01 93.5% 83.2%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 34.0 3.92e-01 98.4% 82.0%
4qjvB00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 37.0 4.14e-01 84.6% 86.2%
2w1kA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.56 50.0 4.22e-01 97.6% 68.3%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 43.0 4.16e-01 81.3% 88.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 3.33e-01 96.7% 43.8%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.55 45.0 4.24e-01 87.8% 100.0%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 4.00e-01 82.1% 88.2%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.54 49.0 4.05e-01 98.4% 61.4%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 4.27e-01 92.7% 91.2%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 33.0 3.38e-01 89.4% 61.9%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 41.0 3.98e-01 83.7% 89.8%
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.52 37.0 3.55e-01 100.0% 61.4%
3v0dA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.46e-01 73.2% 80.4%
2gysA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.97e-01 98.4% 94.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 39.0 3.42e-01 100.0% 53.7%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 37.0 3.11e-01 100.0% 44.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 46.0 5.34e-01 100.0% 90.6%
3949052 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 49.0 5.54e-01 100.0% 97.8%
3452625 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.70 50.0 5.44e-01 99.2% 90.0%
3965956 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.70 49.0 5.52e-01 99.2% 98.9%
3967786 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 50.0 5.59e-01 100.0% 96.8%
3387360 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 44.0 5.11e-01 100.0% 91.8%
3626966 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.69 52.0 5.45e-01 97.6% 87.3%
3166182 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 48.0 5.42e-01 100.0% 97.8%
3971461 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 48.0 5.43e-01 99.2% 98.9%
3968971 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.68 48.0 5.45e-01 99.2% 98.9%
4606765 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.67 49.0 5.12e-01 100.0% 84.5%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 51.0 5.45e-01 98.4% 94.3%
4565791 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.66 47.0 5.31e-01 100.0% 100.0%
4991187 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 49.0 5.47e-01 96.7% 100.0%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 47.0 4.91e-01 82.1% 81.8%
5012955 1.1.7.128 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 0.65 43.0 5.05e-01 75.6% 97.6%
4952629 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 46.0 5.02e-01 82.1% 90.0%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 51.0 5.40e-01 100.0% 97.1%
4400928 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.65 48.0 4.81e-01 100.0% 76.0%
4062509 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.65 50.0 5.31e-01 100.0% 95.2%
3519457 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.64 47.0 5.21e-01 97.6% 96.8%
4441129 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.64 49.0 4.99e-01 100.0% 84.2%
4273561 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.64 51.0 4.99e-01 100.0% 78.5%
3784272 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.63 57.0 5.81e-01 98.4% 100.0%
4402697 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 45.0 4.61e-01 91.1% 77.5%
3988580 1.1.7.95 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.62 50.0 5.24e-01 100.0% 97.3%
3187444 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.62 53.0 5.48e-01 100.0% 99.1%
3615541 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 56.0 5.58e-01 99.2% 97.6%
5004529 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.61 47.0 4.87e-01 100.0% 87.0%
4075020 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.61 50.0 4.81e-01 100.0% 79.0%
None — 0.60 50.0 5.16e-01 100.0% 95.7%
3404702 304.16.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.60 36.0 4.18e-01 73.2% 84.7%
3986600 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.60 50.0 4.93e-01 100.0% 85.4%
5001719 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.60 48.0 4.96e-01 100.0% 90.4%
3945010 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.59 50.0 4.62e-01 100.0% 70.6%
3968995 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.59 50.0 5.19e-01 100.0% 98.3%
3981035 1.1.8.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › T6SS_TssF 0.59 39.0 4.22e-01 74.8% 80.0%
4466667 1.1.7.95 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.59 48.0 5.01e-01 100.0% 95.7%
4010415 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 48.0 4.63e-01 100.0% 76.6%
5023511 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.58 50.0 5.15e-01 99.2% 100.0%
3434465 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.57 49.0 5.03e-01 98.4% 95.8%
3947204 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.57 48.0 4.79e-01 98.4% 87.7%
3440486 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.57 50.0 5.08e-01 100.0% 97.5%
4020238 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.56 50.0 4.73e-01 99.2% 90.0%
3971757 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 4.92e-01 100.0% 96.7%
3689767 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.56 47.0 4.71e-01 100.0% 90.4%
4962621 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 45.0 4.33e-01 85.4% 80.0%
3885282 10.32.1.195 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAAT-like 0.55 37.0 3.47e-01 100.0% 56.0%
4014364 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 49.0 4.06e-01 100.0% 59.1%
3194535 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.54 48.0 4.67e-01 98.4% 97.0%
4167365 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 37.0 4.15e-01 100.0% 92.6%
4938797 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.53 48.0 4.47e-01 100.0% 94.2%
D2 medium residues 1099-1201
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.75 62.0 6.55e-01 97.1% 100.0%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 59.0 6.29e-01 100.0% 100.0%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 60.0 6.30e-01 96.1% 100.0%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 54.0 5.88e-01 90.3% 100.0%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.70 27.0 4.27e-01 94.2% 90.7%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.67 59.0 5.85e-01 99.0% 91.7%
2uxtA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 45.0 4.19e-01 75.7% 76.2%
3b1nA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 39.0 2.79e-01 100.0% 23.8%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 31.0 3.33e-01 73.8% 65.2%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.67e-01 100.0% 69.4%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.52 45.0 3.34e-01 100.0% 89.8%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 28.0 3.05e-01 90.3% 61.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 25.0 3.47e-01 96.1% 96.1%
2c4eA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 36.0 2.67e-01 74.8% 29.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 30.0 3.35e-01 73.8% 65.0%
5007064 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.57 28.0 3.32e-01 70.9% 66.7%
4962176 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.56 31.0 3.46e-01 73.8% 70.0%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.55 30.0 3.34e-01 70.9% 67.5%
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 31.0 3.33e-01 73.8% 65.2%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 29.0 3.34e-01 73.8% 69.6%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 30.0 3.38e-01 73.8% 71.2%
5018720 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.53 29.0 3.23e-01 73.8% 65.9%
5063859 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.53 30.0 3.36e-01 73.8% 71.2%
4999510 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.53 30.0 3.28e-01 73.8% 68.2%
5014147 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.52 30.0 3.35e-01 73.8% 72.5%
166546 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.52 28.0 3.05e-01 90.3% 61.1%
4943514 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.96e-01 100.0% 93.8%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 30.0 3.32e-01 73.8% 70.6%
3242801 2.1.1.217 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.51 34.0 3.94e-01 84.5% 94.7%
5027871 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.50 30.0 3.17e-01 73.8% 65.6%