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KX822733.1__APC44312.1__X__00045

Bact-Vir

KX822733.1__APC44312.1__X__00045

Identity

Accession:
KX822733 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_PH357

TaxID: 1913046

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-111
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 32.3 8.10e-08 45.1% 95.7%
D2 medium residues 122-164
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 72.0 6.83e-01 100.0% 76.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 69.0 6.36e-01 100.0% 85.5%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.68 54.0 3.49e-01 93.0% 61.1%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.67 53.0 4.97e-01 100.0% 71.4%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 53.0 4.52e-01 100.0% 72.2%
3er6A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.64 46.0 3.08e-01 97.7% 18.2%
3ic9A04 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.62 44.0 3.30e-01 81.4% 34.1%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.61 52.0 4.78e-01 95.3% 75.0%
1dxlA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 43.0 3.26e-01 83.7% 38.8%
2a8xA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 42.0 3.20e-01 81.4% 38.5%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.57 48.0 4.20e-01 100.0% 75.7%
6cmzB03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 40.0 3.07e-01 81.4% 33.9%
5w1uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 2.40e-01 86.0% 8.4%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.36e-01 93.0% 61.4%
2w7yA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 46.0 3.01e-01 100.0% 54.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721414 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.80 67.0 6.66e-01 100.0% 91.1%
5004578 101.1.1.545 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.75 64.0 5.82e-01 100.0% 78.3%
3337820 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.74 62.0 5.14e-01 97.7% 53.8%
3974554 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.74e-01 93.0% 90.0%
3303351 101.1.2.645 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.72 59.0 5.42e-01 97.7% 70.0%
3661711 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.72 59.0 4.99e-01 100.0% 75.0%
3945774 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 59.0 5.65e-01 97.7% 86.0%
4465858 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.69 57.0 5.50e-01 97.7% 96.0%
4336911 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.05e-01 100.0% 67.1%
4933758 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.40e-01 97.7% 88.9%
3969487 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.52e-01 100.0% 93.9%
3807088 592.1.1.6 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.67 55.0 4.89e-01 100.0% 74.3%
4499345 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.31e-01 100.0% 94.0%
3623357 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.65 53.0 5.07e-01 100.0% 83.6%
4962703 101.1.1.555 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7119 0.65 56.0 4.80e-01 100.0% 75.7%
3985830 109.3.1.84 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Toxin_15 0.62 50.0 3.05e-01 97.7% 15.2%
4102570 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.56e-01 100.0% 88.0%
3928289 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.61 48.0 3.31e-01 100.0% 53.3%
5075381 304.31.2.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › Substrate-binding domain of HMG-CoA reductase › HMG-CoA_red 0.61 45.0 2.81e-01 95.3% 13.3%
3515204 4156.1.1.11 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N 0.58 45.0 2.97e-01 100.0% 51.5%
3806240 3676.1.1.0 ↗ alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain 0.58 45.0 4.19e-01 100.0% 66.2%
3887950 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.23e-01 100.0% 73.3%
3442087 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.56 39.0 3.60e-01 79.1% 65.6%
3485075 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.86e-01 100.0% 57.3%
3247203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.50e-01 100.0% 46.3%
3699171 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.52e-01 95.3% 34.2%