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KX822733.1__APC44347.1__X__00080
Bact-VirKX822733.1__APC44347.1__X__00080
Identity
- Accession:
- KX822733 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-50
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.74 | 58.0 | 5.31e-01 | 100.0% | 65.2% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 58.0 | 4.72e-01 | 100.0% | 89.0% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 58.0 | 4.78e-01 | 100.0% | 93.6% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 49.0 | 3.86e-01 | 100.0% | 37.0% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 48.0 | 3.90e-01 | 100.0% | 40.6% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 50.0 | 4.07e-01 | 100.0% | 78.9% |
| 7xc8A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.62 | 46.0 | 3.67e-01 | 100.0% | 40.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 50.0 | 4.23e-01 | 100.0% | 53.2% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 51.0 | 4.28e-01 | 100.0% | 63.0% |
| 3zn4A00 | 2.60.120.1180 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 54.0 | 3.78e-01 | 100.0% | 45.6% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.61 | 42.0 | 2.57e-01 | 72.9% | 18.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 49.0 | 3.52e-01 | 100.0% | 45.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 48.0 | 4.12e-01 | 100.0% | 54.3% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 46.0 | 4.37e-01 | 100.0% | 70.5% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 44.0 | 2.80e-01 | 83.3% | 41.6% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.59 | 44.0 | 4.41e-01 | 100.0% | 86.0% |
| 1c4pC00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 50.0 | 3.73e-01 | 100.0% | 84.8% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 3.44e-01 | 100.0% | 35.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 47.0 | 3.81e-01 | 100.0% | 44.1% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.58 | 44.0 | 4.00e-01 | 100.0% | 59.2% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 46.0 | 4.59e-01 | 100.0% | 90.0% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 41.0 | 4.27e-01 | 100.0% | 84.4% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 42.0 | 3.34e-01 | 87.5% | 42.4% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.57 | 45.0 | 3.66e-01 | 100.0% | 53.2% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 41.0 | 3.26e-01 | 100.0% | 35.0% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 39.0 | 3.97e-01 | 97.9% | 78.7% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.55 | 42.0 | 4.19e-01 | 100.0% | 89.8% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 45.0 | 3.53e-01 | 100.0% | 77.5% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 44.0 | 4.40e-01 | 100.0% | 89.8% |
| 1yuzA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 39.0 | 4.32e-01 | 95.8% | 94.7% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.54 | 42.0 | 4.03e-01 | 100.0% | 74.6% |
| 4zdnA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 46.0 | 3.75e-01 | 97.9% | 83.0% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 42.0 | 2.69e-01 | 89.6% | 73.7% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.53 | 41.0 | 2.88e-01 | 100.0% | 62.1% |
| 2z73B01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 44.0 | 2.67e-01 | 97.9% | 77.7% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.52 | 42.0 | 3.46e-01 | 100.0% | 49.5% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.51 | 43.0 | 3.74e-01 | 100.0% | 72.2% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 42.0 | 4.08e-01 | 100.0% | 87.3% |
| 3f59D00 | 2.60.220.30 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.50 | 45.0 | 3.11e-01 | 100.0% | 40.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3760983 | 3335.1.1.3 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C | 0.71 | 62.0 | 4.91e-01 | 100.0% | 96.0% |
| 3056284 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.68 | 58.0 | 4.76e-01 | 100.0% | 92.6% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.64 | 46.0 | 3.19e-01 | 100.0% | 20.0% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.64 | 47.0 | 3.93e-01 | 100.0% | 43.2% |
| 3347090 | 221.1.1.159 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 | 0.64 | 47.0 | 3.93e-01 | 100.0% | 45.9% |
| 5047668 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.62 | 43.0 | 2.70e-01 | 100.0% | 14.1% |
| 5026901 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 49.0 | 4.52e-01 | 85.4% | 73.3% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.61 | 46.0 | 3.74e-01 | 100.0% | 41.0% |
| 3278973 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.61 | 45.0 | 4.74e-01 | 95.8% | 97.5% |
| 3941069 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.61 | 49.0 | 3.89e-01 | 100.0% | 44.1% |
| 3602534 | 375.1.1.199 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 | 0.60 | 42.0 | 4.47e-01 | 100.0% | 92.5% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.60 | 50.0 | 3.37e-01 | 100.0% | 29.0% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 47.0 | 3.53e-01 | 100.0% | 32.6% |
| 4995774 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.59 | 43.0 | 4.59e-01 | 95.8% | 97.5% |
| 4979655 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.59 | 46.0 | 3.50e-01 | 100.0% | 35.2% |
| 4980022 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 42.0 | 4.24e-01 | 100.0% | 78.0% |
| 3269943 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 40.0 | 3.38e-01 | 100.0% | 40.0% |
| 3493644 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.56 | 47.0 | 3.33e-01 | 100.0% | 67.9% |
| 4554731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.56 | 43.0 | 2.84e-01 | 100.0% | 18.3% |
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 46.0 | 4.50e-01 | 97.9% | 94.5% |
| 3604593 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 46.0 | 4.46e-01 | 100.0% | 90.9% |
| 3929133 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.74e-01 | 100.0% | 65.3% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.55 | 40.0 | 4.11e-01 | 100.0% | 91.1% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 47.0 | 4.64e-01 | 100.0% | 94.0% |
| 2640865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 44.0 | 4.31e-01 | 100.0% | 90.9% |
| 3187671 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 44.0 | 4.22e-01 | 100.0% | 83.3% |
| 4953966 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.53 | 39.0 | 2.54e-01 | 81.2% | 66.7% |
| 3601859 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 45.0 | 4.16e-01 | 100.0% | 92.3% |
| 4928795 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 41.0 | 4.17e-01 | 100.0% | 95.6% |
| 3849943 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.53 | 37.0 | 2.83e-01 | 100.0% | 26.2% |
| 3719741 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 44.0 | 4.30e-01 | 100.0% | 90.9% |
| 3244077 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.53 | 44.0 | 4.15e-01 | 100.0% | 83.3% |
| 4000362 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.52 | 38.0 | 3.17e-01 | 87.5% | 46.7% |
| 2627958 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.52 | 45.0 | 3.14e-01 | 100.0% | 36.1% |
| 3543316 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.52 | 39.0 | 2.34e-01 | 87.5% | 19.5% |
| 3600775 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 40.0 | 4.06e-01 | 100.0% | 97.8% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 2.98e-01 | 95.8% | 52.0% |
| 4988079 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 41.0 | 4.23e-01 | 100.0% | 100.0% |
| 3555970 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.52 | 46.0 | 3.11e-01 | 100.0% | 40.6% |
| 3738165 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.51 | 37.0 | 3.00e-01 | 87.5% | 80.0% |
| 5037842 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.51 | 41.0 | 2.66e-01 | 97.9% | 30.2% |
| 3604145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 43.0 | 4.10e-01 | 100.0% | 83.3% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.51 | 42.0 | 2.40e-01 | 100.0% | 49.0% |
| 5018277 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.51 | 42.0 | 3.45e-01 | 100.0% | 100.0% |
| 4544250 | 284.1.1.4 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB | 0.51 | 43.0 | 3.66e-01 | 100.0% | 78.6% |
| 3825960 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.51 | 38.0 | 3.90e-01 | 100.0% | 95.6% |
| 3620613 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 40.0 | 4.15e-01 | 100.0% | 95.6% |
| 4405873 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.50 | 37.0 | 2.98e-01 | 87.5% | 60.0% |
| 3574971 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 37.0 | 3.73e-01 | 100.0% | 82.0% |