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KX822733.1__APC44392.1__X__00125

Bact-Vir

KX822733.1__APC44392.1__X__00125

Identity

Accession:
KX822733 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_PH357

TaxID: 1913046

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.81 60.0 5.12e-01 96.4% 50.0%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.79 52.0 5.90e-01 92.7% 97.4%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.75 55.0 5.65e-01 87.3% 84.3%
1v9xA00 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.74 65.0 5.14e-01 100.0% 78.1%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.74 64.0 5.38e-01 100.0% 61.5%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.72 55.0 5.10e-01 87.3% 64.8%
2l31A00 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.72 61.0 4.84e-01 96.4% 53.6%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.70 55.0 4.60e-01 87.3% 77.6%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.66 46.0 4.52e-01 83.6% 67.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 48.0 3.94e-01 100.0% 42.3%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 49.0 4.44e-01 85.5% 60.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.44e-01 81.8% 82.1%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.37e-01 81.8% 80.6%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.84e-01 78.2% 95.4%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.61 54.0 4.75e-01 100.0% 79.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.30e-01 81.8% 73.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 3.96e-01 81.8% 67.6%
1oe8A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 50.0 4.46e-01 98.2% 96.2%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 50.0 3.30e-01 100.0% 94.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.12e-01 81.8% 73.3%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.24e-01 94.5% 88.6%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.18e-01 81.8% 80.0%
2r7dA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 4.14e-01 80.0% 98.3%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.16e-01 81.8% 79.3%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.40e-01 78.2% 95.5%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.02e-01 81.8% 75.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.16e-01 83.6% 76.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 3.78e-01 81.8% 57.7%
5k5iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 32.0 3.35e-01 85.5% 57.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 40.0 3.97e-01 81.8% 75.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 4.06e-01 81.8% 75.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.92e-01 81.8% 74.2%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.97e-01 81.8% 77.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.80e-01 81.8% 64.3%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 42.0 3.49e-01 90.9% 91.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 3.51e-01 81.8% 55.7%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.53 39.0 3.63e-01 80.0% 84.3%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 37.0 3.18e-01 78.2% 78.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.85 68.0 6.89e-01 90.9% 85.5%
3938044 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.84 66.0 5.45e-01 94.5% 49.5%
3504153 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.82 51.0 6.10e-01 78.2% 100.0%
3657469 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.80 61.0 5.03e-01 100.0% 46.0%
3206458 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.77 59.0 5.21e-01 94.5% 56.2%
4013684 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.77 59.0 5.59e-01 94.5% 69.2%
3991519 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.77 61.0 5.63e-01 87.3% 67.1%
3879962 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.77 55.0 4.25e-01 89.1% 35.0%
3503323 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.77 55.0 4.19e-01 89.1% 33.6%
4882574 375.1.1.35 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP 0.77 55.0 5.46e-01 78.2% 72.4%
3539719 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.77 55.0 5.07e-01 89.1% 60.0%
3849360 376.1.3.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.76 62.0 5.57e-01 89.1% 65.3%
3238192 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.75 57.0 5.80e-01 92.7% 83.6%
4028826 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.75 64.0 4.96e-01 96.4% 47.5%
3230993 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 52.0 5.21e-01 89.1% 74.5%
3662203 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.73 63.0 5.47e-01 96.4% 95.3%
3717291 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.73 47.0 2.93e-01 72.7% 13.3%
3592264 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.73 64.0 4.97e-01 96.4% 46.1%
3715795 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 57.0 4.69e-01 100.0% 46.7%
4120496 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.71 57.0 5.12e-01 87.3% 72.0%
3559946 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.71 55.0 5.25e-01 92.7% 72.3%
3582235 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.71 54.0 5.29e-01 89.1% 75.0%
3891751 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 54.0 5.34e-01 92.7% 78.3%
3351761 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.70 62.0 5.17e-01 100.0% 93.7%
3703254 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 57.0 4.98e-01 90.9% 62.5%
3547848 376.1.1.107 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_NSD 0.68 55.0 4.90e-01 90.9% 62.5%
4965229 377.1.1.133 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 0.67 55.0 5.79e-01 89.1% 98.0%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 49.0 4.42e-01 83.6% 57.5%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.65 49.0 3.88e-01 83.6% 38.3%
3234939 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.65 52.0 4.90e-01 87.3% 73.8%
3231134 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.64 56.0 4.70e-01 94.5% 60.0%
3235494 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.64 47.0 4.77e-01 80.0% 78.2%
4154378 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.64 50.0 4.70e-01 83.6% 95.4%
3525801 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.61 50.0 3.63e-01 90.9% 31.5%
3610022 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 51.0 2.93e-01 94.5% 44.9%
3621439 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.72e-01 81.8% 87.0%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 44.0 4.32e-01 81.8% 80.0%
4966684 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 48.0 4.71e-01 89.1% 91.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 43.0 4.26e-01 81.8% 75.0%
3815248 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 51.0 3.44e-01 100.0% 66.0%
4964086 2004.1.1.1218 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PilB3_C 0.59 39.0 2.28e-01 100.0% 7.8%
4232512 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 47.0 4.18e-01 90.9% 86.7%
4664510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 43.0 4.15e-01 81.8% 69.2%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.20e-01 81.8% 81.7%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.19e-01 81.8% 81.8%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 41.0 4.10e-01 81.8% 78.3%
3893816 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 40.0 4.23e-01 76.4% 91.1%
1386398 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 41.0 3.81e-01 81.8% 61.3%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 41.0 3.92e-01 81.8% 67.7%
5045092 2.1.1.364 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110 0.56 41.0 3.50e-01 85.5% 82.9%
3768088 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.24e-01 80.0% 70.8%
4952526 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 40.0 3.56e-01 83.6% 65.6%
3535277 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.55 39.0 3.19e-01 80.0% 70.8%
3705995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 3.77e-01 87.3% 83.7%
3600657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.63e-01 76.4% 63.1%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.01e-01 81.8% 89.1%
3596008 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.96e-01 72.7% 100.0%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.70e-01 81.8% 77.1%
3576481 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 45.0 2.96e-01 100.0% 40.4%
4054514 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.51 43.0 3.07e-01 100.0% 80.5%
None — 0.51 44.0 2.70e-01 98.2% 28.2%
3575253 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 38.0 3.61e-01 87.3% 74.3%