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KX822733.1__APC44424.1__X__00157

Bact-Vir

KX822733.1__APC44424.1__X__00157

Identity

Accession:
KX822733 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_PH357

TaxID: 1913046

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 49.0 4.71e-01 71.9% 59.1%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 41.0 4.19e-01 70.2% 61.1%
4bxoB02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.67 45.0 4.37e-01 70.2% 83.1%
2qhoD00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 45.0 4.77e-01 75.4% 81.6%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.65 44.0 3.93e-01 71.9% 66.7%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 48.0 4.33e-01 100.0% 59.7%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.60 41.0 3.57e-01 71.9% 45.3%
1sxjE02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 42.0 4.13e-01 94.7% 98.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3183328 103.12.1.13 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2015 0.75 54.0 5.15e-01 75.4% 90.8%
3971803 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.65 44.0 4.34e-01 70.2% 71.7%
3596013 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 49.0 3.82e-01 86.0% 93.6%
4985432 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.57 50.0 4.62e-01 100.0% 94.5%
3800931 101.1.1.70 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like 0.55 35.0 3.23e-01 82.5% 48.0%
3796083 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.54 49.0 3.72e-01 100.0% 68.5%
D2 medium residues 58-142
PDB
Domain cluster: rep: NC_055841.1__YP_010107183.1__KNU99_gp041__00041__D80-140
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 44.0 4.14e-01 98.8% 51.5%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 43.0 3.99e-01 98.8% 50.5%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 40.0 3.83e-01 97.6% 56.1%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 40.0 3.69e-01 100.0% 50.0%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 48.0 4.42e-01 97.6% 68.5%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 52.0 3.93e-01 100.0% 58.0%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 39.0 4.42e-01 97.6% 100.0%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.56 46.0 3.87e-01 100.0% 53.1%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 45.0 4.11e-01 91.8% 81.2%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 45.0 4.33e-01 91.8% 95.9%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.25e-01 100.0% 93.0%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.54 38.0 2.30e-01 74.1% 99.7%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.53 41.0 4.37e-01 96.5% 100.0%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 37.0 3.69e-01 74.1% 100.0%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 3.79e-01 94.1% 71.7%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.45e-01 100.0% 98.6%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 4.09e-01 94.1% 82.4%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 44.0 4.03e-01 98.8% 93.0%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 4.07e-01 98.8% 93.6%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.51 43.0 4.18e-01 92.9% 100.0%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.84e-01 100.0% 89.1%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 45.0 3.93e-01 100.0% 78.1%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 43.0 3.97e-01 100.0% 90.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3997163 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 43.0 4.23e-01 97.6% 60.7%
3268335 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.63 46.0 4.47e-01 98.8% 69.1%
3254478 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.63 43.0 4.32e-01 96.5% 70.6%
3985230 10.12.1.63 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.62 40.0 3.92e-01 97.6% 61.1%
3287407 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 39.0 3.78e-01 98.8% 60.0%
4287411 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.59 42.0 4.32e-01 75.3% 88.7%
4945544 7587.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.58 49.0 4.38e-01 98.8% 93.1%
4994995 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 44.0 3.23e-01 97.6% 30.6%
4066146 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 4.05e-01 84.7% 78.1%
3936136 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 44.0 3.52e-01 100.0% 43.6%
4960962 10.11.1.0 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain 0.55 41.0 4.14e-01 98.8% 80.0%
3410256 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 48.0 3.63e-01 100.0% 48.6%
3734570 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 46.0 3.12e-01 100.0% 82.4%
3174077 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 43.0 3.92e-01 92.9% 75.2%
3237004 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 46.0 3.09e-01 100.0% 92.8%
3246201 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 46.0 3.22e-01 100.0% 90.8%
3608005 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 46.0 3.14e-01 100.0% 88.4%
4318640 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 46.0 3.05e-01 100.0% 95.1%
4012827 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 45.0 2.94e-01 98.8% 82.8%
5059788 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.53 47.0 3.82e-01 100.0% 65.5%
3274867 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 45.0 3.23e-01 100.0% 90.2%
80896 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.52 46.0 3.48e-01 100.0% 68.5%
3412093 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 45.0 3.04e-01 100.0% 85.5%
4944194 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.52 45.0 3.63e-01 100.0% 58.9%
3725951 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 45.0 3.79e-01 98.8% 95.3%
4983769 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.52 45.0 3.59e-01 100.0% 60.0%
3245736 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.52 40.0 3.76e-01 98.8% 67.6%
3970971 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.51 46.0 3.60e-01 100.0% 58.3%
3706733 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 36.0 3.11e-01 97.6% 45.9%
5063169 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.51 44.0 3.67e-01 100.0% 65.6%
3704833 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 44.0 3.07e-01 100.0% 88.4%
1734642 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.51 45.0 3.63e-01 100.0% 60.0%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.50 42.0 3.42e-01 98.8% 78.9%
4440911 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 44.0 3.01e-01 100.0% 86.8%
4663971 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.50 40.0 3.02e-01 89.4% 46.2%