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KX879752.1__APC45934.1__QHH_22__00022

Bact-Vir

KX879752.1__APC45934.1__QHH_22__00022

Identity

Accession:
KX879752 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-53
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13986.12 best DUF4224 65.9 3.50e-18 91.8% 95.6%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.67 56.0 3.44e-01 100.0% 40.4%
2pjsA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 48.0 3.83e-01 81.6% 84.3%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 48.0 3.06e-01 83.7% 42.0%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 53.0 4.06e-01 100.0% 38.8%
3mcwA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.63 45.0 3.06e-01 77.6% 85.1%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.63 52.0 4.21e-01 100.0% 61.1%
4du5B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 46.0 2.92e-01 83.7% 31.2%
1n0uA03 3.90.1430.10 Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) 0.62 45.0 3.56e-01 79.6% 44.9%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 52.0 3.45e-01 100.0% 24.8%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.18e-01 100.0% 26.5%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 48.0 3.71e-01 100.0% 39.7%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.58 44.0 2.63e-01 89.8% 13.8%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.58 47.0 4.28e-01 100.0% 68.1%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.11e-01 100.0% 26.1%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 45.0 4.25e-01 100.0% 73.1%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 40.0 3.95e-01 77.6% 75.0%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 46.0 3.35e-01 100.0% 91.4%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.49e-01 79.6% 58.3%
2j62A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 47.0 2.91e-01 95.9% 82.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 38.0 2.56e-01 75.5% 42.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.82e-01 79.6% 66.7%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 43.0 3.57e-01 100.0% 43.4%
2bonA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.55 42.0 3.18e-01 85.7% 87.5%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.08e-01 98.0% 80.6%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.66e-01 100.0% 55.6%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 39.0 2.59e-01 77.6% 27.6%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.21e-01 100.0% 32.6%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 41.0 2.47e-01 89.8% 12.5%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.78e-01 83.7% 77.6%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.15e-01 100.0% 74.6%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.51e-01 98.0% 54.4%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.53 39.0 2.68e-01 85.7% 35.3%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.19e-01 100.0% 32.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.18e-01 100.0% 34.1%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 2.86e-01 85.7% 68.8%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.04e-01 100.0% 28.8%
1whyA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 43.0 3.89e-01 100.0% 69.4%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.61e-01 93.9% 21.0%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.69e-01 98.0% 64.2%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.52e-01 100.0% 58.4%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 2.81e-01 81.6% 49.6%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.38e-01 95.9% 77.3%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.72e-01 93.9% 73.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.19e-01 83.7% 79.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.00e-01 100.0% 32.5%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.43e-01 98.0% 62.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.68 57.0 5.70e-01 100.0% 96.0%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.67 55.0 5.49e-01 100.0% 94.0%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.65 54.0 5.41e-01 100.0% 96.0%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 54.0 5.29e-01 100.0% 87.3%
3954861 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 54.0 5.26e-01 100.0% 89.1%
139679 101.1.9.21 alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.63 52.0 4.21e-01 100.0% 61.1%
3289439 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.63 52.0 5.04e-01 100.0% 87.3%
4527553 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.62 51.0 5.05e-01 100.0% 90.9%
4994568 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.61 49.0 4.79e-01 100.0% 87.3%
4668740 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 50.0 4.08e-01 100.0% 46.7%
4223228 101.1.9.21 alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.60 52.0 4.32e-01 100.0% 68.9%
4232456 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 45.0 3.51e-01 81.6% 51.4%
1844183 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.59 49.0 3.71e-01 100.0% 37.1%
3387245 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.59 49.0 3.70e-01 100.0% 36.3%
4941453 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 48.0 3.84e-01 95.9% 59.6%
4197446 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 48.0 3.67e-01 100.0% 36.3%
3580147 109.4.1.1505 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 0.58 42.0 2.56e-01 79.6% 26.0%
3476654 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 40.0 2.34e-01 73.5% 12.1%
171609 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 47.0 3.60e-01 100.0% 36.8%
5034431 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.57 47.0 3.41e-01 100.0% 32.1%
None 0.57 50.0 3.39e-01 100.0% 34.9%
3828246 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.57 45.0 3.53e-01 87.8% 50.9%
3801792 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.57 45.0 3.96e-01 87.8% 69.3%
3279459 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.57 47.0 3.58e-01 98.0% 38.2%
4679974 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.57 42.0 3.69e-01 79.6% 56.0%
3577481 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.57 48.0 3.44e-01 100.0% 36.9%
4586962 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.56 44.0 3.37e-01 87.8% 61.7%
4959921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.74e-01 100.0% 50.6%
3284505 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.56 47.0 3.66e-01 100.0% 42.6%
3994831 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.56 38.0 2.43e-01 73.5% 72.3%
3921946 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.55 43.0 3.08e-01 87.8% 40.6%
5031624 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 42.0 3.54e-01 100.0% 46.7%
4946594 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.39e-01 100.0% 42.0%
3484726 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.54 44.0 3.84e-01 95.9% 68.8%
3588934 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 44.0 4.17e-01 100.0% 75.4%
5077394 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.54 42.0 3.28e-01 100.0% 37.4%
4022512 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.54 46.0 3.72e-01 100.0% 62.0%
4992861 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.54 42.0 3.42e-01 100.0% 44.2%
None 0.54 44.0 3.18e-01 100.0% 31.0%
3959369 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.01e-01 79.6% 83.5%
3320650 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 40.0 3.30e-01 85.7% 57.0%
4985324 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.53 43.0 3.17e-01 100.0% 31.6%
5005057 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.53 43.0 3.43e-01 100.0% 42.6%
4976557 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.53 43.0 3.09e-01 100.0% 28.6%
3603679 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.53 43.0 3.38e-01 100.0% 40.8%
4949793 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.52 42.0 3.29e-01 100.0% 37.7%
3580194 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.33e-01 79.6% 53.8%
3943344 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.52 43.0 3.18e-01 100.0% 32.1%
360918 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 41.0 3.34e-01 100.0% 43.6%
5059337 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.52 40.0 3.13e-01 100.0% 34.8%
4986778 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 39.0 3.03e-01 85.7% 69.2%
5036096 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.30e-01 93.9% 66.4%
3710117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.49e-01 100.0% 53.3%
3616963 109.4.1.1505 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 0.51 38.0 2.46e-01 79.6% 26.9%
5051539 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.50 40.0 3.10e-01 89.8% 48.7%
3998495 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.51e-01 89.8% 78.6%